Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_H19
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 149 1e-36
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 147 6e-36
04_03_0563 - 17195605-17196681 29 1.8
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530... 29 2.4
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 28 4.2
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603... 28 5.5
01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190 28 5.5
07_01_0763 + 5854986-5855000,5855266-5855775,5855899-5856159 27 7.3
07_01_0760 - 5844349-5844401,5844521-5844665,5844782-5845297,584... 27 7.3
05_03_0591 + 15892772-15893412,15893478-15893910 27 9.7
01_05_0293 - 20532559-20532572,20532573-20532798,20532926-205339... 27 9.7
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 149 bits (361), Expect = 1e-36
Identities = 68/131 (51%), Positives = 86/131 (65%)
Frame = +3
Query: 150 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 329
MGAY+Y+ EL+R+K SDVMRF+ R+R W+YRQ + R RPTRPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 330 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIADEXXXXXXXXXXXXNSYW 509
++R+ YGKPK G+ QLK RN +S+A+E NSYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120
Query: 510 VAQDSSYKYFE 542
V +DS+YKYFE
Sbjct: 121 VNEDSTYKYFE 131
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 147 bits (356), Expect = 6e-36
Identities = 67/130 (51%), Positives = 85/130 (65%)
Frame = +3
Query: 153 GAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYVI 332
GAY+Y+ EL+R+K SDVMRF+ R+R W+YRQ + R RPTRPDKARRLGY+AKQGYV+
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 333 FRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIADEXXXXXXXXXXXXNSYWV 512
+R+ YGKPK G+ QLK RN +S+A+E NSYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226
Query: 513 AQDSSYKYFE 542
+DS+YKYFE
Sbjct: 227 NEDSTYKYFE 236
>04_03_0563 - 17195605-17196681
Length = 358
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 253 VCTALPGPRGQTRREGLDTVPSKVMLSSESACAVVAV 363
V ALP PR T+P+ V++ S S C +V V
Sbjct: 147 VVEALPSPRIMAVHMPFSTLPASVVVDSSSGCKIVYV 183
>01_06_1684 +
39151412-39151702,39152410-39152548,39152926-39153040,
39153232-39153332,39153688-39153809,39153885-39153976,
39155288-39155393,39155477-39155631,39155904-39156031,
39156349-39156479,39157171-39157268,39157371-39158162,
39158472-39158523
Length = 773
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -1
Query: 437 ASGFQLVDTMALGFAVGSSLGHWAFTATTAHADSEDNITLLGTVSKPSRLVWPR 276
AS +LV + GFA G++ A A AH DS+ ++ L + L W R
Sbjct: 55 ASAARLVASAVAGFAQGAAAAAIAAGAIGAHVDSDRDLRHLSRLRYKRWLWWTR 108
>06_03_0715 -
23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 482 TTPATNTLISNRLQVASGFQLVDTMALGFAVGSSLGHWAFT 360
T A N LIS+ G QLVD A S W+FT
Sbjct: 302 TLEAINDLISSCSTTVGGTQLVDPAAGNVCFASGSAGWSFT 342
>06_03_1360 +
29558789-29559020,29559203-29559378,29560285-29560346,
29560426-29561212,29561516-29562244
Length = 661
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 61 SRPICVQTDDVTSD--QFCIDFVARSITDSSRWARTDIYRSCIGKS 192
SRP CV + + + +C+ + +S D+ RW+R ++ CI S
Sbjct: 12 SRPDCVNSSNPYHECSDYCLRQIVKSREDNHRWSR--VHPHCINAS 55
>01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190
Length = 393
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 422 LVDTMALGFAVGSSLGHWAFTATTAHADSEDNITLLGTVSKPSRLVWPRG 273
LV +G V S GHW ++ + AD+E +L + + +RL+ RG
Sbjct: 303 LVFHSRMGLCVQISRGHWLWSVWESIADAELAADILHSSATSTRLIPIRG 352
>07_01_0763 + 5854986-5855000,5855266-5855775,5855899-5856159
Length = 261
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -1
Query: 419 VDTMALGFAVGSSLGHWAFTATTAHADSE--DNITLLGTVSKPSRLVWPRGPGSA 261
V M G G S+G + AH ++ DN+ L GT + W G GSA
Sbjct: 88 VKNMVCGPGHGISIGSLGDHNSEAHVNNVTVDNVRLYGTTNGARIKTWQGGKGSA 142
>07_01_0760 -
5844349-5844401,5844521-5844665,5844782-5845297,
5845405-5845596,5845686-5845817,5845926-5846069
Length = 393
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -1
Query: 419 VDTMALGFAVGSSLGHWAFTATTAHADSE--DNITLLGTVSKPSRLVWPRGPGSA 261
V M G G S+G + AH ++ DN+ L GT + W G GSA
Sbjct: 241 VKNMVCGPGHGISIGSLGDHNSEAHVNNVTVDNVRLYGTANGARIKTWQGGKGSA 295
>05_03_0591 + 15892772-15893412,15893478-15893910
Length = 357
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 242 PVDSYAPRSQAHEARQGEKAWIPCQARLCYLQNPRAP 352
P+D R+ H A +G W P + + Q PR P
Sbjct: 108 PIDCRHGRALFHSAGEGLAVWDPMAGDVRWQQEPRIP 144
>01_05_0293 -
20532559-20532572,20532573-20532798,20532926-20533960,
20534670-20534996
Length = 533
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 243 QLTRMHRAPRPTRPD 287
QLTR+H P P RPD
Sbjct: 73 QLTRLHPPPEPPRPD 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,041,623
Number of Sequences: 37544
Number of extensions: 295532
Number of successful extensions: 810
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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