Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H19
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   163   1e-40
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    28   3.8  
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       28   3.8  
AF067613-13|ABA54415.1|  443|Caenorhabditis elegans Hypothetical...    28   3.8  
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    28   5.0  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  163 bits (395), Expect = 1e-40
 Identities = 70/131 (53%), Positives = 94/131 (71%)
 Frame = +3

Query: 150 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 329
           MGAY+Y+QE++RKK SD +R+LLRIR W YRQL+ +HR PRPTRP+KARRLGYRAKQG+V
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60

Query: 330 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIADEXXXXXXXXXXXXNSYW 509
           ++R+               TYGKPK+HGVN+LK  ++ Q++A+             NSYW
Sbjct: 61  VYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYW 120

Query: 510 VAQDSSYKYFE 542
           VA+DS+YK++E
Sbjct: 121 VAEDSTYKFYE 131


>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
            protein 40 protein.
          Length = 1415

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +1

Query: 277  RGQTRREGLDTVPSKVMLSSESACAVVAVNA-QCPRELPTANPRAMVSTN*NPLATCS 447
            R  T+  G    P     SS S   ++A    Q P    TA PR  V+   +P A+CS
Sbjct: 1279 RSFTQLAGATPPPPHSAASSSSRPTIIAAGGRQVPVGRATAQPRVNVANIYSPFASCS 1336


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +1

Query: 277  RGQTRREGLDTVPSKVMLSSESACAVVAVNA-QCPRELPTANPRAMVSTN*NPLATCS 447
            R  T+  G    P     SS S   ++A    Q P    TA PR  V+   +P A+CS
Sbjct: 1279 RSFTQLAGATPPPPHSAASSSSRPTIIAAGGRQVPVGRATAQPRVNVANIYSPFASCS 1336


>AF067613-13|ABA54415.1|  443|Caenorhabditis elegans Hypothetical
           protein F56D6.1 protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 58  ISRPICVQTDDVTSDQFCIDFVARSIT--DSSRWARTDIYRSCIGKS 192
           +S   C+ ++D     FC  FVA+ +T  D+  W R   Y++  G S
Sbjct: 14  LSNAACLDSNDQEIQGFCFKFVAQQMTYSDARNWCR---YKNPAGSS 57


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -3

Query: 111 TKLIRSHIIGL-NTNRAADARIVQHDESTGI 22
           T+ I+  +IGL  T RAA+A ++ HD  TG+
Sbjct: 138 TRRIQFDVIGLCETKRAAEAHLIHHD-GTGV 167


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 174 ELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPR 272
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296


>U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical
           protein K08D10.5 protein.
          Length = 602

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 174 ELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPR 272
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,440,314
Number of Sequences: 27780
Number of extensions: 244052
Number of successful extensions: 671
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)