Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_H18
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces... 126 1e-30
SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Sch... 31 0.14
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 1.7
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 27 2.2
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 5.1
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 25 5.1
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 25 6.8
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 25 9.0
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 9.0
>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 208
Score = 126 bits (305), Expect = 1e-30
Identities = 72/165 (43%), Positives = 99/165 (60%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
P R+ RR+Q R +RP V+ PT+RY+ KVRAGRGFTL E++A+G++
Sbjct: 29 PGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSR 87
Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFP-NGKKVLKGEANEEERKLAT 381
A TIGI VD RRRN+S ESLQ NV R+K Y A LI+FP + KG+A + T
Sbjct: 88 RVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQT 147
Query: 382 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 516
+ ++P+ Q A + A+PITE+ KNF A+ L R+ A+ G
Sbjct: 148 DV-AAVLPITQEAVEE-AKPITEEAKNFNAFSTLSNERAYARYAG 190
>SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 30.7 bits (66), Expect = 0.14
Identities = 14/53 (26%), Positives = 31/53 (58%)
Frame = +1
Query: 226 IAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQ 384
IA+ R + + + R++E ++ ++F +GK V+ G +E++ KLA++
Sbjct: 76 IALHARNAEYNPKRFAAVIMRIREPKSTALIFASGKMVVLGGKSEDDSKLASR 128
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 343 KGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDE 456
+ E N ++ + TQ + PV+++ PK + P+T E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 296 NIELVLFFSRMARRY*RVKLMKKSANWLL 382
N+E+ + F+ + R+ R+ L KKS N LL
Sbjct: 1502 NMEMWIKFANLCRKSGRISLAKKSLNLLL 1530
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 382 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 486
Q P+ PVQ P A+P ED + + LR
Sbjct: 430 QPSSPVQPVQNVKPAQPAQPSLEDAAKRRVEEMLR 464
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 199 NPSFARTIGIAVDPRRRNKSVESLQINV 282
NPS A +A D ++S+ES NV
Sbjct: 396 NPSVAAASNVAADQSTEDESIESTSTNV 423
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 464 SKLINTLEELVLLPNLWA 517
SKLI TL+E VL+ LWA
Sbjct: 254 SKLIYTLDEDVLVDALWA 271
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 501 NRTSSSKVLISFEVLLILSDGSSNRFWCCLLYWHQGTTQLS 379
N +S K+L +EVLL G F+ + +GT LS
Sbjct: 296 NECTSHKLLFPYEVLLDKDGGIVAEFYSTIALTKKGTIILS 336
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 343 KGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGAR 495
+GE + R + + R V++T P++ PI ++ KN ++L AR
Sbjct: 473 RGEPAVQTRNHSKRTRTATSSVEETTPRAFNVPIAQN-KNPSELEFLEHAR 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,013
Number of Sequences: 5004
Number of extensions: 37014
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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