Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_H18
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 142 2e-34
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 139 1e-33
12_02_0891 + 24065001-24065101,24065260-24065345,24065902-240659... 30 0.97
03_05_0548 + 25439649-25439734,25440712-25440799,25441160-254412... 29 3.0
10_08_0114 - 14911119-14911301,14911458-14911550,14911634-149116... 28 3.9
05_04_0020 - 17199627-17199947,17200129-17200203,17200301-172003... 27 6.8
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 27 9.0
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641... 27 9.0
01_05_0720 - 24588623-24588658,24588888-24589196,24589449-245913... 27 9.0
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 142 bits (343), Expect = 2e-34
Identities = 74/166 (44%), Positives = 105/166 (63%), Gaps = 2/166 (1%)
Frame = +1
Query: 25 PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
PAR+ RR+ R LRP+V+C T++Y+ K RAGRGFTL E++A+G+
Sbjct: 28 PARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRGFTLEELKAAGIPK 87
Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFP-NGKKVLKGEANEEERKLAT 381
FA TIGI+VD RR+N+S+E LQ NV RLK Y+A+L++FP +KV G++ EE AT
Sbjct: 88 KFAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTPEELATAT 147
Query: 382 QLRGPLMPVQQTAPKSV-ARPITEDEKNFKAYQYLRGARSIAKLVG 516
Q++G MP+ + +SV +T+D K FKAY LR R + +G
Sbjct: 148 QVQGDYMPITRGEKRSVEVVKVTDDMKAFKAYAKLRVERMNQRHIG 193
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 139 bits (337), Expect = 1e-33
Identities = 73/166 (43%), Positives = 105/166 (63%), Gaps = 2/166 (1%)
Frame = +1
Query: 25 PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
PAR+ RR+ R LRP+V+C T++Y+ K RAGRGFTL E++A+G+
Sbjct: 28 PARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRGFTLEELKAAGIPK 87
Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFP-NGKKVLKGEANEEERKLAT 381
+A TIGI+VD RR+N+S+E LQ NV RLK Y+A+L++FP +KV G++ EE AT
Sbjct: 88 KYAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTAEELATAT 147
Query: 382 QLRGPLMPVQQTAPKSV-ARPITEDEKNFKAYQYLRGARSIAKLVG 516
Q++G MP+ + +SV +T++ K FKAY LR R + VG
Sbjct: 148 QVQGDYMPIARGEKRSVEVVKVTDEMKAFKAYAKLRVERMNQRHVG 193
>12_02_0891 +
24065001-24065101,24065260-24065345,24065902-24065965,
24066137-24066224,24066810-24066881,24067821-24067871,
24067940-24067984,24068086-24068178,24068265-24068366,
24068442-24068515,24068540-24068579
Length = 271
Score = 30.3 bits (65), Expect = 0.97
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +1
Query: 226 IAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQ 384
IA+ R + + + R++E + ++F +GK V G +E++ KLA +
Sbjct: 101 IALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAAR 153
>03_05_0548 +
25439649-25439734,25440712-25440799,25441160-25441204,
25441407-25441478,25442402-25442452,25442527-25442571,
25442670-25442762,25442848-25442949,25443024-25443097,
25443130-25443160
Length = 228
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 280 VHRLKEYRARLILFPNGKKVLKGEANEEERKLATQ 384
+ R++E + ++F +GK V G +E++ KLA +
Sbjct: 79 IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAAR 113
>10_08_0114 -
14911119-14911301,14911458-14911550,14911634-14911678,
14911831-14911953,14912090-14912177,14912976-14913118
Length = 224
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +1
Query: 226 IAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQ 384
IA+ R + + + R+++ + ++F +GK V G +E+ KLA +
Sbjct: 65 IALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKSEDHSKLAAR 117
>05_04_0020 -
17199627-17199947,17200129-17200203,17200301-17200384,
17200483-17200562,17201354-17201508,17202602-17203215
Length = 442
Score = 27.5 bits (58), Expect = 6.8
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 269 NDSTDLLRLRGSTAIPIVLAKEGFNPEALISRRVNPLPARTFV**RT-VGQRTTGLR 102
+ ST GSTA LA+ F+ E +SRR LPAR FV + +G + GLR
Sbjct: 73 SSSTPAAAAAGSTAAN-PLAR--FSVEPAVSRRQQQLPARQFVGGKVPLGLKRKGLR 126
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -3
Query: 516 AHKFGNRTSSSKVLISFEVLLILS 445
+HK N+T SS+ L+SF+ +L+L+
Sbjct: 580 SHKQANKTESSQGLLSFQDVLLLT 603
>06_03_0499 + 21461608-21463427,21463517-21463627,21463867-21464143,
21464265-21464353,21464508-21464595,21464698-21464907,
21464985-21465110,21465429-21465620,21466532-21467188
Length = 1189
Score = 27.1 bits (57), Expect = 9.0
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -3
Query: 489 SSKVLISFEVLLILSDGSSNRF--WCCLLYWHQGTTQLSSQFALFFISFTLQYLLAIREK 316
SS++ + F L G N F W +L W L S A+FF++ + Y AIR
Sbjct: 965 SSEICLQFPALY--QQGPRNLFFDWYRILGWM--ANGLYSSLAIFFLNICIFYDQAIRSG 1020
Query: 315 NKTSSI 298
+T+ +
Sbjct: 1021 GQTADM 1026
>01_05_0720 -
24588623-24588658,24588888-24589196,24589449-24591366,
24591412-24591693,24592027-24592328
Length = 948
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 414 LLYWHQGTTQLSSQFALFFISFTLQYLLAIREKNKTSSIFLQP 286
LLY T L+S LF Q L+A+REK K + +P
Sbjct: 236 LLYGAPPVTVLASVLLLFMTFVLCQQLIAVREKIKRPAPLQRP 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,716,059
Number of Sequences: 37544
Number of extensions: 237343
Number of successful extensions: 531
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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