Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_H18
(518 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X64707-1|CAA45963.1| 211|Homo sapiens BBC1 protein. 191 1e-48
BC106058-1|AAI06059.1| 211|Homo sapiens ribosomal protein L13 p... 191 1e-48
BC093063-1|AAH93063.1| 211|Homo sapiens RPL13 protein protein. 191 1e-48
BC063378-1|AAH63378.1| 211|Homo sapiens ribosomal protein L13 p... 191 1e-48
BC027463-1|AAH27463.1| 211|Homo sapiens ribosomal protein L13 p... 191 1e-48
BC020804-1|AAH20804.1| 211|Homo sapiens RPL13 protein protein. 191 1e-48
BC014167-1|AAH14167.1| 211|Homo sapiens ribosomal protein L13 p... 191 1e-48
BC013078-1|AAH13078.1| 211|Homo sapiens ribosomal protein L13 p... 191 1e-48
BC010994-1|AAH10994.1| 211|Homo sapiens ribosomal protein L13 p... 191 1e-48
BC007805-1|AAH07805.1| 211|Homo sapiens ribosomal protein L13 p... 191 1e-48
BC007563-1|AAH07563.1| 211|Homo sapiens ribosomal protein L13 p... 191 1e-48
BC007345-1|AAH07345.1| 211|Homo sapiens ribosomal protein L13 p... 191 1e-48
BC004954-1|AAH04954.1| 211|Homo sapiens RPL13 protein protein. 191 1e-48
AB062392-1|BAB93479.1| 211|Homo sapiens ribosomal protein L13 p... 191 1e-48
BC066320-1|AAH66320.1| 211|Homo sapiens ribosomal protein L13 p... 188 1e-47
AB007172-1|BAA25832.1| 65|Homo sapiens ribosomal protein L13 p... 60 5e-09
X54993-1|CAA38736.1| 335|Homo sapiens TFIID protein. 31 3.2
M55654-1|AAA36731.1| 339|Homo sapiens TATA-box binding protein ... 31 3.2
M34960-1|AAC03409.1| 339|Homo sapiens transcription factor IID ... 31 3.2
CR456776-1|CAG33057.1| 339|Homo sapiens TBP protein. 31 3.2
BT019657-1|AAV38463.1| 336|Homo sapiens TATA box binding protei... 31 3.2
BC110341-1|AAI10342.1| 338|Homo sapiens TATA box binding protei... 31 3.2
BC109054-1|AAI09055.1| 288|Homo sapiens TBP protein protein. 31 3.2
BC109053-1|AAI09054.1| 338|Homo sapiens TATA box binding protei... 31 3.2
AL031259-5|CAA20286.1| 339|Homo sapiens TATA box binding protei... 31 3.2
BC126114-1|AAI26115.1| 579|Homo sapiens cell division cycle 40 ... 30 4.2
BC117145-1|AAI17146.1| 579|Homo sapiens cell division cycle 40 ... 30 4.2
BC111061-1|AAI11062.1| 280|Homo sapiens CDC40 protein protein. 30 4.2
AL671518-2|CAI13322.1| 579|Homo sapiens cell division cycle 40 ... 30 4.2
AL671518-1|CAI13321.1| 539|Homo sapiens cell division cycle 40 ... 30 4.2
AL445068-1|CAI22519.1| 539|Homo sapiens cell division cycle 40 ... 30 4.2
AK222721-1|BAD96441.1| 579|Homo sapiens pre-mRNA splicing facto... 30 4.2
AF061241-1|AAC25166.1| 542|Homo sapiens splicing factor hPRP17 ... 30 4.2
AF038392-1|AAC39730.1| 579|Homo sapiens pre-mRNA splicing facto... 30 4.2
AB208903-1|BAD92140.1| 501|Homo sapiens pre-mRNA splicing facto... 30 4.2
DQ448593-1|ABD93323.1| 375|Homo sapiens TATA box binding protei... 30 5.6
BC117185-1|AAI17186.1| 375|Homo sapiens TATA box binding protei... 30 5.6
BC117159-1|AAI17160.1| 375|Homo sapiens TATA box binding protei... 30 5.6
AY457923-1|AAR24281.1| 375|Homo sapiens TBP-related factor 3 pr... 30 5.6
>X64707-1|CAA45963.1| 211|Homo sapiens BBC1 protein.
Length = 211
Score = 191 bits (465), Expect = 1e-48
Identities = 96/165 (58%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
PAR+ RR++ R +RP+VRCPTVRYHTKVRAGRGF+L E+R +G++
Sbjct: 29 PARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHK 88
Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKV-LKGEANEEERKLAT 381
ARTIGI+VDPRRRNKS ESLQ NV RLKEYR++LILFP KG+++ EE KLAT
Sbjct: 89 KVARTIGISVDPRRRNKSTESLQTNVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLAT 148
Query: 382 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 516
QL GP+MPV+ K AR ITE+EKNFKA+ LR AR+ A+L G
Sbjct: 149 QLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193
>BC106058-1|AAI06059.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 191 bits (465), Expect = 1e-48
Identities = 96/165 (58%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
PAR+ RR++ R +RP+VRCPTVRYHTKVRAGRGF+L E+R +G++
Sbjct: 29 PARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHK 88
Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKV-LKGEANEEERKLAT 381
ARTIGI+VDPRRRNKS ESLQ NV RLKEYR++LILFP KG+++ EE KLAT
Sbjct: 89 KVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLAT 148
Query: 382 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 516
QL GP+MPV+ K AR ITE+EKNFKA+ LR AR+ A+L G
Sbjct: 149 QLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193
>BC093063-1|AAH93063.1| 211|Homo sapiens RPL13 protein protein.
Length = 211
Score = 191 bits (465), Expect = 1e-48
Identities = 96/165 (58%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
PAR+ RR++ R +RP+VRCPTVRYHTKVRAGRGF+L E+R +G++
Sbjct: 29 PARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHK 88
Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKV-LKGEANEEERKLAT 381
ARTIGI+VDPRRRNKS ESLQ NV RLKEYR++LILFP KG+++ EE KLAT
Sbjct: 89 KVARTIGISVDPRRRNKSTESLQTNVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLAT 148
Query: 382 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 516
QL GP+MPV+ K AR ITE+EKNFKA+ LR AR+ A+L G
Sbjct: 149 QLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193
>BC063378-1|AAH63378.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 191 bits (465), Expect = 1e-48
Identities = 96/165 (58%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
PAR+ RR++ R +RP+VRCPTVRYHTKVRAGRGF+L E+R +G++
Sbjct: 29 PARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHK 88
Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKV-LKGEANEEERKLAT 381
ARTIGI+VDPRRRNKS ESLQ NV RLKEYR++LILFP KG+++ EE KLAT
Sbjct: 89 KVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLAT 148
Query: 382 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 516
QL GP+MPV+ K AR ITE+EKNFKA+ LR AR+ A+L G
Sbjct: 149 QLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193
>BC027463-1|AAH27463.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 191 bits (465), Expect = 1e-48
Identities = 96/165 (58%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
PAR+ RR++ R +RP+VRCPTVRYHTKVRAGRGF+L E+R +G++
Sbjct: 29 PARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHK 88
Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKV-LKGEANEEERKLAT 381
ARTIGI+VDPRRRNKS ESLQ NV RLKEYR++LILFP KG+++ EE KLAT
Sbjct: 89 KVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLAT 148
Query: 382 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 516
QL GP+MPV+ K AR ITE+EKNFKA+ LR AR+ A+L G
Sbjct: 149 QLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193
>BC020804-1|AAH20804.1| 211|Homo sapiens RPL13 protein protein.
Length = 211
Score = 191 bits (465), Expect = 1e-48
Identities = 96/165 (58%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
PAR+ RR++ R +RP+VRCPTVRYHTKVRAGRGF+L E+R +G++
Sbjct: 29 PARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHK 88
Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKV-LKGEANEEERKLAT 381
ARTIGI+VDPRRRNKS ESLQ NV RLKEYR++LILFP KG+++ EE KLAT
Sbjct: 89 KVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLAT 148
Query: 382 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 516
QL GP+MPV+ K AR ITE+EKNFKA+ LR AR+ A+L G
Sbjct: 149 QLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193
>BC014167-1|AAH14167.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 191 bits (465), Expect = 1e-48
Identities = 96/165 (58%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
PAR+ RR++ R +RP+VRCPTVRYHTKVRAGRGF+L E+R +G++
Sbjct: 29 PARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHK 88
Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKV-LKGEANEEERKLAT 381
ARTIGI+VDPRRRNKS ESLQ NV RLKEYR++LILFP KG+++ EE KLAT
Sbjct: 89 KVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLAT 148
Query: 382 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 516
QL GP+MPV+ K AR ITE+EKNFKA+ LR AR+ A+L G
Sbjct: 149 QLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193
>BC013078-1|AAH13078.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 191 bits (465), Expect = 1e-48
Identities = 96/165 (58%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
PAR+ RR++ R +RP+VRCPTVRYHTKVRAGRGF+L E+R +G++
Sbjct: 29 PARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHK 88
Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKV-LKGEANEEERKLAT 381
ARTIGI+VDPRRRNKS ESLQ NV RLKEYR++LILFP KG+++ EE KLAT
Sbjct: 89 KVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLAT 148
Query: 382 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 516
QL GP+MPV+ K AR ITE+EKNFKA+ LR AR+ A+L G
Sbjct: 149 QLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193
>BC010994-1|AAH10994.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 191 bits (465), Expect = 1e-48
Identities = 96/165 (58%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
PAR+ RR++ R +RP+VRCPTVRYHTKVRAGRGF+L E+R +G++
Sbjct: 29 PARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHK 88
Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKV-LKGEANEEERKLAT 381
ARTIGI+VDPRRRNKS ESLQ NV RLKEYR++LILFP KG+++ EE KLAT
Sbjct: 89 KVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLAT 148
Query: 382 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 516
QL GP+MPV+ K AR ITE+EKNFKA+ LR AR+ A+L G
Sbjct: 149 QLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193
>BC007805-1|AAH07805.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 191 bits (465), Expect = 1e-48
Identities = 96/165 (58%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
PAR+ RR++ R +RP+VRCPTVRYHTKVRAGRGF+L E+R +G++
Sbjct: 29 PARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHK 88
Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKV-LKGEANEEERKLAT 381
ARTIGI+VDPRRRNKS ESLQ NV RLKEYR++LILFP KG+++ EE KLAT
Sbjct: 89 KVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLAT 148
Query: 382 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 516
QL GP+MPV+ K AR ITE+EKNFKA+ LR AR+ A+L G
Sbjct: 149 QLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193
>BC007563-1|AAH07563.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 191 bits (465), Expect = 1e-48
Identities = 96/165 (58%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
PAR+ RR++ R +RP+VRCPTVRYHTKVRAGRGF+L E+R +G++
Sbjct: 29 PARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHK 88
Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKV-LKGEANEEERKLAT 381
ARTIGI+VDPRRRNKS ESLQ NV RLKEYR++LILFP KG+++ EE KLAT
Sbjct: 89 KVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLAT 148
Query: 382 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 516
QL GP+MPV+ K AR ITE+EKNFKA+ LR AR+ A+L G
Sbjct: 149 QLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193
>BC007345-1|AAH07345.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 191 bits (465), Expect = 1e-48
Identities = 96/165 (58%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
PAR+ RR++ R +RP+VRCPTVRYHTKVRAGRGF+L E+R +G++
Sbjct: 29 PARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHK 88
Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKV-LKGEANEEERKLAT 381
ARTIGI+VDPRRRNKS ESLQ NV RLKEYR++LILFP KG+++ EE KLAT
Sbjct: 89 KVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLAT 148
Query: 382 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 516
QL GP+MPV+ K AR ITE+EKNFKA+ LR AR+ A+L G
Sbjct: 149 QLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193
>BC004954-1|AAH04954.1| 211|Homo sapiens RPL13 protein protein.
Length = 211
Score = 191 bits (465), Expect = 1e-48
Identities = 96/165 (58%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
PAR+ RR++ R +RP+VRCPTVRYHTKVRAGRGF+L E+R +G++
Sbjct: 29 PARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHK 88
Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKV-LKGEANEEERKLAT 381
ARTIGI+VDPRRRNKS ESLQ NV RLKEYR++LILFP KG+++ EE KLAT
Sbjct: 89 KVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLAT 148
Query: 382 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 516
QL GP+MPV+ K AR ITE+EKNFKA+ LR AR+ A+L G
Sbjct: 149 QLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193
>AB062392-1|BAB93479.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 191 bits (465), Expect = 1e-48
Identities = 96/165 (58%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
PAR+ RR++ R +RP+VRCPTVRYHTKVRAGRGF+L E+R +G++
Sbjct: 29 PARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHK 88
Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKV-LKGEANEEERKLAT 381
ARTIGI+VDPRRRNKS ESLQ NV RLKEYR++LILFP KG+++ EE KLAT
Sbjct: 89 KVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLAT 148
Query: 382 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 516
QL GP+MPV+ K AR ITE+EKNFKA+ LR AR+ A+L G
Sbjct: 149 QLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193
>BC066320-1|AAH66320.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 188 bits (457), Expect = 1e-47
Identities = 95/165 (57%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
PAR+ RR++ R +RP+VRC TVRYHTKVRAGRGF+L E+R +G++
Sbjct: 29 PARKIRRRKARQAKARRIAPRPASGPIRPIVRCTTVRYHTKVRAGRGFSLEELRVAGIHK 88
Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKV-LKGEANEEERKLAT 381
ARTIGI+VDPRRRNKS ESLQ NV RLKEYR++LILFP KG+++ EE KLAT
Sbjct: 89 KVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLAT 148
Query: 382 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 516
QL GP+MPV+ K AR ITE+EKNFKA+ LR AR+ A+L G
Sbjct: 149 QLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193
>AB007172-1|BAA25832.1| 65|Homo sapiens ribosomal protein L13
protein.
Length = 65
Score = 60.1 bits (139), Expect = 5e-09
Identities = 30/49 (61%), Positives = 36/49 (73%)
Frame = +1
Query: 370 KLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 516
KLATQL GP+MPV+ K AR ITE+EKNFKA+ LR AR+ A+L G
Sbjct: 2 KLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 50
>X54993-1|CAA38736.1| 335|Homo sapiens TFIID protein.
Length = 335
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 226 IAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQ 384
IA+ R + + + R++E R ++F +GK V G +EE+ +LA +
Sbjct: 179 IALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAAR 231
>M55654-1|AAA36731.1| 339|Homo sapiens TATA-box binding protein
protein.
Length = 339
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 226 IAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQ 384
IA+ R + + + R++E R ++F +GK V G +EE+ +LA +
Sbjct: 183 IALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAAR 235
>M34960-1|AAC03409.1| 339|Homo sapiens transcription factor IID
protein.
Length = 339
Score = 30.7 bits (66), Expect = 3.2
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 241 RRRNKSVESLQIN--VHRLKEYRARLILFPNGKKVLKGEANEEERKLATQ 384
RRRN + + R++E R ++F +GK V G +EE+ +LA +
Sbjct: 186 RRRNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAAR 235
>CR456776-1|CAG33057.1| 339|Homo sapiens TBP protein.
Length = 339
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 226 IAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQ 384
IA+ R + + + R++E R ++F +GK V G +EE+ +LA +
Sbjct: 183 IALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAAR 235
>BT019657-1|AAV38463.1| 336|Homo sapiens TATA box binding protein
protein.
Length = 336
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 226 IAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQ 384
IA+ R + + + R++E R ++F +GK V G +EE+ +LA +
Sbjct: 180 IALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAAR 232
>BC110341-1|AAI10342.1| 338|Homo sapiens TATA box binding protein
protein.
Length = 338
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 226 IAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQ 384
IA+ R + + + R++E R ++F +GK V G +EE+ +LA +
Sbjct: 182 IALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAAR 234
>BC109054-1|AAI09055.1| 288|Homo sapiens TBP protein protein.
Length = 288
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 226 IAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQ 384
IA+ R + + + R++E R ++F +GK V G +EE+ +LA +
Sbjct: 132 IALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAAR 184
>BC109053-1|AAI09054.1| 338|Homo sapiens TATA box binding protein
protein.
Length = 338
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 226 IAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQ 384
IA+ R + + + R++E R ++F +GK V G +EE+ +LA +
Sbjct: 182 IALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAAR 234
>AL031259-5|CAA20286.1| 339|Homo sapiens TATA box binding protein
protein.
Length = 339
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 226 IAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQ 384
IA+ R + + + R++E R ++F +GK V G +EE+ +LA +
Sbjct: 183 IALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAAR 235
>BC126114-1|AAI26115.1| 579|Homo sapiens cell division cycle 40
homolog (S. cerevisiae) protein.
Length = 579
Score = 30.3 bits (65), Expect = 4.2
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +1
Query: 217 TIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQLRGP 396
T G A+DP N V + I E L +F G+K + +E A+ + G
Sbjct: 134 TYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKKFKEND-ASNIDGF 192
Query: 397 LMP-VQQTAPKSVARPITEDEK 459
L P + K VA+P E++K
Sbjct: 193 LGPWAKYVDEKDVAKPSEEEQK 214
>BC117145-1|AAI17146.1| 579|Homo sapiens cell division cycle 40
homolog (S. cerevisiae) protein.
Length = 579
Score = 30.3 bits (65), Expect = 4.2
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +1
Query: 217 TIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQLRGP 396
T G A+DP N V + I E L +F G+K + +E A+ + G
Sbjct: 134 TYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKKFKEND-ASNIDGF 192
Query: 397 LMP-VQQTAPKSVARPITEDEK 459
L P + K VA+P E++K
Sbjct: 193 LGPWAKYVDEKDVAKPSEEEQK 214
>BC111061-1|AAI11062.1| 280|Homo sapiens CDC40 protein protein.
Length = 280
Score = 30.3 bits (65), Expect = 4.2
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +1
Query: 217 TIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQLRGP 396
T G A+DP N V + I E L +F G+K + +E A+ + G
Sbjct: 134 TYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKKFKEND-ASNIDGF 192
Query: 397 LMP-VQQTAPKSVARPITEDEK 459
L P + K VA+P E++K
Sbjct: 193 LGPWAKYVDEKDVAKPSEEEQK 214
>AL671518-2|CAI13322.1| 579|Homo sapiens cell division cycle 40
homolog (S. cerevisiae) protein.
Length = 579
Score = 30.3 bits (65), Expect = 4.2
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +1
Query: 217 TIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQLRGP 396
T G A+DP N V + I E L +F G+K + +E A+ + G
Sbjct: 134 TYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKKFKEND-ASNIDGF 192
Query: 397 LMP-VQQTAPKSVARPITEDEK 459
L P + K VA+P E++K
Sbjct: 193 LGPWAKYVDEKDVAKPSEEEQK 214
>AL671518-1|CAI13321.1| 539|Homo sapiens cell division cycle 40
homolog (S. cerevisiae) protein.
Length = 539
Score = 30.3 bits (65), Expect = 4.2
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +1
Query: 217 TIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQLRGP 396
T G A+DP N V + I E L +F G+K + +E A+ + G
Sbjct: 134 TYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKKFKEND-ASNIDGF 192
Query: 397 LMP-VQQTAPKSVARPITEDEK 459
L P + K VA+P E++K
Sbjct: 193 LGPWAKYVDEKDVAKPSEEEQK 214
>AL445068-1|CAI22519.1| 539|Homo sapiens cell division cycle 40
homolog (S. cerevisiae) protein.
Length = 539
Score = 30.3 bits (65), Expect = 4.2
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +1
Query: 217 TIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQLRGP 396
T G A+DP N V + I E L +F G+K + +E A+ + G
Sbjct: 134 TYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKKFKEND-ASNIDGF 192
Query: 397 LMP-VQQTAPKSVARPITEDEK 459
L P + K VA+P E++K
Sbjct: 193 LGPWAKYVDEKDVAKPSEEEQK 214
>AK222721-1|BAD96441.1| 579|Homo sapiens pre-mRNA splicing factor
17 variant protein.
Length = 579
Score = 30.3 bits (65), Expect = 4.2
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +1
Query: 217 TIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQLRGP 396
T G A+DP N V + I E L +F G+K + +E A+ + G
Sbjct: 134 TYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKKFKEND-ASNIDGF 192
Query: 397 LMP-VQQTAPKSVARPITEDEK 459
L P + K VA+P E++K
Sbjct: 193 LGPWAKYVDEKDVAKPSEEEQK 214
>AF061241-1|AAC25166.1| 542|Homo sapiens splicing factor hPRP17
protein.
Length = 542
Score = 30.3 bits (65), Expect = 4.2
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +1
Query: 217 TIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQLRGP 396
T G A+DP N V + I E L +F G+K + +E A+ + G
Sbjct: 97 TYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKKFKEND-ASNIDGF 155
Query: 397 LMP-VQQTAPKSVARPITEDEK 459
L P + K VA+P E++K
Sbjct: 156 LGPWAKYVDEKDVAKPSREEQK 177
>AF038392-1|AAC39730.1| 579|Homo sapiens pre-mRNA splicing factor
protein.
Length = 579
Score = 30.3 bits (65), Expect = 4.2
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +1
Query: 217 TIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQLRGP 396
T G A+DP N V + I E L +F G+K + +E A+ + G
Sbjct: 134 TYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKKFKEND-ASNIDGF 192
Query: 397 LMP-VQQTAPKSVARPITEDEK 459
L P + K VA+P E++K
Sbjct: 193 LGPWAKYVDEKDVAKPSEEEQK 214
>AB208903-1|BAD92140.1| 501|Homo sapiens pre-mRNA splicing factor
17 variant protein.
Length = 501
Score = 30.3 bits (65), Expect = 4.2
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +1
Query: 217 TIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFPNGKKVLKGEANEEERKLATQLRGP 396
T G A+DP N V + I E L +F G+K + +E A+ + G
Sbjct: 133 TYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKKFKEND-ASNIDGF 191
Query: 397 LMP-VQQTAPKSVARPITEDEK 459
L P + K VA+P E++K
Sbjct: 192 LGPWAKYVDEKDVAKPSEEEQK 213
>DQ448593-1|ABD93323.1| 375|Homo sapiens TATA box binding protein
like 2 protein.
Length = 375
Score = 29.9 bits (64), Expect = 5.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 280 VHRLKEYRARLILFPNGKKVLKGEANEEERKLATQ 384
+ R++E R ++F +GK V G +EE+ +LA +
Sbjct: 238 IMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAAR 272
>BC117185-1|AAI17186.1| 375|Homo sapiens TATA box binding protein
like 2 protein.
Length = 375
Score = 29.9 bits (64), Expect = 5.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 280 VHRLKEYRARLILFPNGKKVLKGEANEEERKLATQ 384
+ R++E R ++F +GK V G +EE+ +LA +
Sbjct: 238 IMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAAR 272
>BC117159-1|AAI17160.1| 375|Homo sapiens TATA box binding protein
like 2 protein.
Length = 375
Score = 29.9 bits (64), Expect = 5.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 280 VHRLKEYRARLILFPNGKKVLKGEANEEERKLATQ 384
+ R++E R ++F +GK V G +EE+ +LA +
Sbjct: 238 IMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAAR 272
>AY457923-1|AAR24281.1| 375|Homo sapiens TBP-related factor 3
protein.
Length = 375
Score = 29.9 bits (64), Expect = 5.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 280 VHRLKEYRARLILFPNGKKVLKGEANEEERKLATQ 384
+ R++E R ++F +GK V G +EE+ +LA +
Sbjct: 238 IMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAAR 272
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,730,392
Number of Sequences: 237096
Number of extensions: 1319331
Number of successful extensions: 6633
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 6535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6618
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -