Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H18
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   145   2e-35
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    58   5e-09
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    32   0.28 
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    32   0.28 
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    32   0.28 
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z49908-6|CAA90100.3|  327|Caenorhabditis elegans Hypothetical pr...    28   4.6  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score =  145 bits (351), Expect = 2e-35
 Identities = 75/165 (45%), Positives = 104/165 (63%), Gaps = 1/165 (0%)
 Frame = +1

Query: 25  PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNP 204
           PAR+ RR+QNR               LR VVRCP  RY+TK R GRGF+L+E++A+G++ 
Sbjct: 29  PARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQ 88

Query: 205 SFARTIGIAVDPRRRNKSVESLQINVHRLKEYRARLILFP-NGKKVLKGEANEEERKLAT 381
           + ARTIGIAVD RR NK+ E L+ N  RLKEY+A+LILFP       KG+++ EE K+A 
Sbjct: 89  AQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAA 148

Query: 382 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 516
           QLRG ++P+  T      R +T+ E+  + ++ LR  R+  K  G
Sbjct: 149 QLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLRKERADKKYRG 193


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 28/59 (47%), Positives = 36/59 (61%)
 Frame = +1

Query: 25  PARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLN 201
           PAR+ RR+QNR               LR VVRCP  RY+TK R GRGF+L+E++A+  N
Sbjct: 29  PARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAEEN 87


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
            F13B9.1c protein.
          Length = 1609

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 313  ILFPNGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 468
            ++F + K VLK     + +  A   +GPL+P  Q+AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
            F13B9.1b protein.
          Length = 1614

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 313  ILFPNGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 468
            ++F + K VLK     + +  A   +GPL+P  Q+AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
            F13B9.1a protein.
          Length = 1632

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 313  ILFPNGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 468
            ++F + K VLK     + +  A   +GPL+P  Q+AP +V   IT+  +N K
Sbjct: 901  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 114 CSLPYCALSYKSSCRQRIYPT 176
           CS P C  S +SSC+Q   PT
Sbjct: 204 CSTPICIQSCQSSCQQACQPT 224


>Z49908-6|CAA90100.3|  327|Caenorhabditis elegans Hypothetical
           protein C07E3.6 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 124 PTVRYHTKVRAGR-GFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVHRLK 294
           P +  + K R GR  ++ +E+    L   +        DPR+R    ++L I+ HRLK
Sbjct: 241 PMLTVNGKTRRGRIVYSTQELNI--LEKYYEEDPNACADPRKRETMCKTLSIDYHRLK 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,871,685
Number of Sequences: 27780
Number of extensions: 208432
Number of successful extensions: 515
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)