Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H16
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   4.7  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    25   6.1  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    25   6.1  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    24   8.1  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 179  PLIYFYNHLYFRYRCRIRA 235
            P ++ Y+H Y   RCR+RA
Sbjct: 2188 PCMFSYSHNYGSRRCRLRA 2206


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 121 KTLRGRWFSLSKLTLLYYDVTVDDFIIRVATAKSENISLV 2
           K +  R  S+ + +L+Y D+  D+F+I    +K+ N+  V
Sbjct: 113 KQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYV 152


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 140 PHYSFRQDTSGTLVLFEQ 87
           PH + R+D SG LV  E+
Sbjct: 152 PHAAIREDVSGNLVALEE 169


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 148 FQPPTTRS-DKTLRGRWFSLSKLTLLYYDVTVDDFIIRVATAKSENI 11
           F P T     K +  R  S+ +   +Y D+  D+F+I    +K+EN+
Sbjct: 106 FSPKTVAMIAKQMITRIQSVHERHFIYRDIKPDNFLIGFPGSKTENV 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,377,320
Number of Sequences: 5004
Number of extensions: 24298
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)