Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H16
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0244 - 1844161-1844241,1844356-1844394,1844510-1844617,184...    29   1.9  
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724...    27   4.5  
01_04_0056 + 15476868-15476896,15477581-15478259                       27   4.5  
02_04_0609 + 24312528-24313352                                         27   5.9  

>06_01_0244 -
           1844161-1844241,1844356-1844394,1844510-1844617,
           1844638-1844685,1845058-1845111,1845214-1845268,
           1845442-1845522,1846238-1846615,1847196-1847401
          Length = 349

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 383 KILSKLYYFYTILHNNIRDKIWAIEDINQYSIGH 282
           +++ KLYYF+ I   N+  K     D NQY+ GH
Sbjct: 262 QLIDKLYYFFLIKLQNVNLK--HPNDTNQYAGGH 293


>09_02_0322 -
           7240125-7241568,7242043-7243253,7245782-7246144,
           7246502-7246522
          Length = 1012

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = -1

Query: 200 DYKNKLRGRPFIPSPP---YLPAPHY 132
           D+++  R RPF  SPP   Y+P+PHY
Sbjct: 282 DFEDFPRARPF-DSPPRDMYMPSPHY 306


>01_04_0056 + 15476868-15476896,15477581-15478259
          Length = 235

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 176 RPFIPSPPYLPAPHYSFRQDTSGTLVL 96
           +P  P  P  PAPH +     SGTL L
Sbjct: 89  KPNTPPDPTRPAPHLTLHHQYSGTLPL 115


>02_04_0609 + 24312528-24313352
          Length = 274

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 386 IKILSKLYYFYTILHNNIRDKIWAIEDINQYSIG 285
           I  L  LY F   L  +I DKIW + ++ Q  +G
Sbjct: 194 ITSLEILYLFQNQLSGSIPDKIWQLPNLMQLVLG 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,584,033
Number of Sequences: 37544
Number of extensions: 152814
Number of successful extensions: 390
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)