Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H16
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    28   2.3  
AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical...    28   2.3  
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical...    27   5.4  
AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine r...    27   7.1  
Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical pr...    26   9.4  

>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 341 NNIRD--KIWAIEDINQYSIGHGEPYNYDKII 252
           +NI D  K  A++ +N Y  G  EP NYD+ I
Sbjct: 65  DNITDEQKTQAVQMVNDYHAGKFEPKNYDEYI 96


>AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical
           protein Y102A5C.36 protein.
          Length = 213

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 155 GEKV*TGAPLIYFYNHLYFRYRC 223
           G+K  +   LIYFYN LYF   C
Sbjct: 39  GKKCLSAFKLIYFYNFLYFSPNC 61


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 209 NINDYKNKLRGRPFIPSPPYLPAPHYSFRQDT 114
           N + +      RPF+P  PY P P  +  + T
Sbjct: 7   NASSFVPNANARPFVPGQPYTPQPEQAAPEPT 38


>AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical
           protein C16C4.13 protein.
          Length = 495

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 121 KTLRGRWFSLSKLTLLYYDVTVDDFIIRV-ATAKSENIS 8
           KTL G + ++ K  + YYD+     +I V  T KS ++S
Sbjct: 319 KTLTGNYKNVEKFGVFYYDIRSFGIVINVPCTLKSFDLS 357


>AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine
           receptor, class z protein5 protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 222 VELELSSVI-DYYFIVIIWFPVSNTILIDVLYSPYF 326
           +EL+L  V+  YYFI  + FPV N +L  +    +F
Sbjct: 91  LELDLFDVLYHYYFISCVIFPVFNILLTLLAVQRFF 126


>Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.12 protein.
          Length = 320

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 240 SVIDYYFIVIIWFPVSNTILIDVLY 314
           S  DY F+  I++PVS+T+ + V +
Sbjct: 3   SAEDYIFLSSIFYPVSSTLAVSVQF 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,543,397
Number of Sequences: 27780
Number of extensions: 138345
Number of successful extensions: 349
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)