Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H16
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   5.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   5.5  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    20   9.6  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    20   9.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    20   9.6  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    20   9.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   9.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 6/25 (24%), Positives = 16/25 (64%)
 Frame = -1

Query: 344 HNNIRDKIWAIEDINQYSIGHGEPY 270
           HNN+ + +++    + +++GHG  +
Sbjct: 401 HNNLLNNVYSTPGPHHHTMGHGHSH 425


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 88  CSKRTNVPEVSCL 126
           C+ +TN  E SCL
Sbjct: 219 CNSKTNTGEYSCL 231


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 88  CSKRTNVPEVSCL 126
           C+ +TN  E SCL
Sbjct: 219 CNSKTNTGEYSCL 231


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 173 PFIPSPPYLPAPHYSFR 123
           P  P P ++P   Y FR
Sbjct: 155 PSTPFPQFIPPNAYKFR 171


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 173 PFIPSPPYLPAPHYSFR 123
           P  P P ++P   Y FR
Sbjct: 150 PLTPFPRFIPPNAYRFR 166


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 173 PFIPSPPYLPAPHYSFR 123
           P  P P ++P   Y FR
Sbjct: 391 PLTPFPRFIPPNAYRFR 407


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 224 DTYI*NINDYKNKLRGRPFIPSPPYLPAP 138
           + Y  N N+Y  KL  + +I +   +P P
Sbjct: 327 NNYKYNYNNYNKKLYYKNYIINIEQIPVP 355


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 155 PYLPAPHYSFRQDTSGTL 102
           PY     ++FR DT+G +
Sbjct: 222 PYFLFGDFNFRTDTAGVI 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,696
Number of Sequences: 438
Number of extensions: 2674
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)