Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H14
         (105 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    25   7.1  

>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 102  EMHSRILLLSFLNLSVDKIN*SVVVQRDQLRAS 4
            E H+   LLS LN+S  K N ++ ++R  L AS
Sbjct: 2642 EAHNLSHLLSRLNMSWTKFNDNIRIRRAVLEAS 2674


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 102  EMHSRILLLSFLNLSVDKIN*SVVVQRDQLRAS 4
            E H+   LLS LN+S  K N ++ ++R  L AS
Sbjct: 2642 EAHNLSHLLSRLNMSWTKFNDNIRIRRAVLEAS 2674


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 102  EMHSRILLLSFLNLSVDKIN*SVVVQRDQLRAS 4
            E H+   LLS LN+S  K N ++ ++R  L AS
Sbjct: 2642 EAHNLSHLLSRLNMSWTKFNDNIRIRRAVLEAS 2674


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,820,120
Number of Sequences: 27780
Number of extensions: 13254
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 12,740,198
effective HSP length: 16
effective length of database: 12,295,718
effective search space used: 221322924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)