Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H14
         (105 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   2.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   2.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    19   5.6  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 12  LTGRAERRLINLFYLHLSSKNSITKCVS 95
           L GR E+RL+N     LSS N++ + V+
Sbjct: 50  LCGRHEKRLLNEL---LSSYNTLERPVA 74


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 12  LTGRAERRLINLFYLHLSSKNSITKCVS 95
           L GR E+RL+N     LSS N++ + V+
Sbjct: 50  LCGRHEKRLLNEL---LSSYNTLERPVA 74


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 9   LLTGRAERRLINLFYLHLSSKNSITKCV 92
           + T R  RR+ NLF   L+  +    C+
Sbjct: 50  IYTDRGLRRIGNLFLASLAIADLFVGCL 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,520
Number of Sequences: 438
Number of extensions: 187
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 15
effective length of database: 139,773
effective search space used:  2655687
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)