Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H13
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    68   5e-13
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    30   0.18 
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    26   2.2  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    25   3.8  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   5.0  
SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyce...    24   8.8  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    24   8.8  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    24   8.8  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 68.1 bits (159), Expect = 5e-13
 Identities = 33/64 (51%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
 Frame = +3

Query: 165 LTCTHPAEDSILDVGNFEKYLKERVTVEGKTNNLGNHVVIARD-KTKVAINADIPFSQRY 341
           +  T    D I DV  FEKYL +R+ V+GKT NLG+ VV++R+  +K+A+ A I FS RY
Sbjct: 14  IDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHIDFSGRY 73

Query: 342 LKYL 353
           LKYL
Sbjct: 74  LKYL 77



 Score = 34.7 bits (76), Expect = 0.006
 Identities = 13/19 (68%), Positives = 19/19 (100%)
 Frame = +1

Query: 352 LTKRYLRKNNLRDWLRVVA 408
           LTK++L+K++LRDWLRVV+
Sbjct: 77  LTKKFLKKHSLRDWLRVVS 95


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 201 PGCYPQQGVCKSMVNLRLNLPSWH 130
           PGC P   +CK++V+  L L  WH
Sbjct: 141 PGCSPTNLICKAVVHSILGLGIWH 164


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 330 SQRYLKYLDQALPQEKQSSGLAPSGGLLHHDS 425
           S+R LKY +     EK   G+      LHH+S
Sbjct: 428 SERELKYYELKRKDEKLDEGIRALNQALHHES 459


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
 Frame = -1

Query: 211 LPTSRMLSSAGCVQVNGKFKAKSS-----LLAPLPRILPPCTPFLPVFWCNW 71
           +P  + L    C+Q +G      S         LP++L PC   +PV   N+
Sbjct: 132 IPRLKALQKGDCIQCSGNVGRSGSGELSIYATELPKLLSPCLHPIPVKLTNY 183


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 109 PCTPFLPVFWCNWPFFATG 53
           PC PFL V++ +  F  TG
Sbjct: 809 PCVPFLGVYFTDLTFLKTG 827


>SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +1

Query: 364 YLRKNNLRDWLRVVAF 411
           YL+  +L+DW+R++ +
Sbjct: 8   YLQSYSLKDWIRIIVY 23


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 10  SATRVLLPRWQLQRSPSQRKAS 75
           +ATR ++  W LQ +P  + A+
Sbjct: 500 AATRCIVDTWMLQHAPQSKSAN 521


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 327  FSQRYLKYLDQALPQEKQSSGLAP 398
            FSQ YL Y  + L QE  S  +AP
Sbjct: 1179 FSQVYLPYAAKLLFQELMSMNIAP 1202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,121
Number of Sequences: 5004
Number of extensions: 37709
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)