Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H13
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal prote...    67   6e-12
AC006618-5|ABB88234.1|  513|Caenorhabditis elegans Gaba/glycine ...    27   7.8  
AC006618-4|ABB88233.1|  546|Caenorhabditis elegans Gaba/glycine ...    27   7.8  

>U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform a protein.
          Length = 130

 Score = 66.9 bits (156), Expect = 6e-12
 Identities = 30/77 (38%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
 Frame = +3

Query: 126 KGAKREDLALNLPLTCTHPAEDSILDVGNFEKYLKERVTVEGKTNNL-GNHVVIARDKTK 302
           K  +++ + L   + C +P ED IL + + E +L E++ V GKT +L  N+V +   K+K
Sbjct: 12  KALRKKKVHLKFNVECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLAANNVKVEVAKSK 71

Query: 303 VAINADIPFSQRYLKYL 353
           V++ +++PFS+RYLKYL
Sbjct: 72  VSVVSEVPFSKRYLKYL 88



 Score = 38.3 bits (85), Expect = 0.002
 Identities = 15/19 (78%), Positives = 19/19 (100%)
 Frame = +1

Query: 352 LTKRYLRKNNLRDWLRVVA 408
           LTK+YL++N+LRDWLRVVA
Sbjct: 88  LTKKYLKRNSLRDWLRVVA 106


>AC006618-5|ABB88234.1|  513|Caenorhabditis elegans Gaba/glycine
           receptor family (seegbr) protein 2, isoform b protein.
          Length = 513

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 150 LNLPSWHLCREFCHLVLLSY 91
           LNL  W L  + CHL +LSY
Sbjct: 158 LNLEKWPLDSQRCHLRILSY 177


>AC006618-4|ABB88233.1|  546|Caenorhabditis elegans Gaba/glycine
           receptor family (seegbr) protein 2, isoform a protein.
          Length = 546

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 150 LNLPSWHLCREFCHLVLLSY 91
           LNL  W L  + CHL +LSY
Sbjct: 158 LNLEKWPLDSQRCHLRILSY 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,716,399
Number of Sequences: 27780
Number of extensions: 222061
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)