Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_H12
(504 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53148-5|AAB37076.1| 130|Caenorhabditis elegans Ribosomal prote... 80 8e-16
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 30 1.1
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 30 1.1
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 30 1.1
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 30 1.1
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 30 1.1
AF036705-9|AAO91724.1| 686|Caenorhabditis elegans Hypothetical ... 27 5.8
Z81043-4|CAB02798.1| 179|Caenorhabditis elegans Hypothetical pr... 27 7.7
>U53148-5|AAB37076.1| 130|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 30 protein.
Length = 130
Score = 80.2 bits (189), Expect = 8e-16
Identities = 51/135 (37%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Frame = +3
Query: 42 MQLHIRG--QSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSEL- 212
MQ+ + G +TH LDV+ ++ IK + EE ++S L + + E
Sbjct: 1 MQIFLLGLDNTTHTLDVDASTTLSAIKGVIGA-----GEEFSISYGSKVLSEELTLGECQ 55
Query: 213 --SSTELDLTVPLLGGKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVN 386
S + L + LLGGKVHGSLARAGKV+ QTP +QY RR+VN
Sbjct: 56 IESLSTLSVNGRLLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVN 115
Query: 387 VVQTFGRRRGPNSNS 431
V G++RGPNSNS
Sbjct: 116 VASGPGKKRGPNSNS 130
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 69 THVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSE 209
++ ++ ++++ DIKN + D+ LS G LED C + +
Sbjct: 164 SYAFKIHREDTVFDIKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGD 210
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +3
Query: 6 RRHEAFLIRRYKMQLHIRGQSTHVLDVNGQESI-GDIKNRLRLLADVESEEVTLSMCGAP 182
RR ++ R ++ RG +D +G + G ++ + L A++ES + +
Sbjct: 499 RRDTPIVLTRLIQEIEKRG-----VDYSGLYVLCGSVEKKKMLRAELESNPLGTELAAES 553
Query: 183 LEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARAGKV 290
+ D+ +++ L L +L PL+ ++HG L A V
Sbjct: 554 IPDTNVIACLIKDFLRELPEPLISPQIHGMLLEAASV 590
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +3
Query: 6 RRHEAFLIRRYKMQLHIRGQSTHVLDVNGQESI-GDIKNRLRLLADVESEEVTLSMCGAP 182
RR ++ R ++ RG +D +G + G ++ + L A++ES + +
Sbjct: 697 RRDTPIVLTRLIQEIEKRG-----VDYSGLYVLCGSVEKKKMLRAELESNPLGTELAAES 751
Query: 183 LEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARAGKV 290
+ D+ +++ L L +L PL+ ++HG L A V
Sbjct: 752 IPDTNVIACLIKDFLRELPEPLISPQIHGMLLEAASV 788
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +3
Query: 6 RRHEAFLIRRYKMQLHIRGQSTHVLDVNGQESI-GDIKNRLRLLADVESEEVTLSMCGAP 182
RR ++ R ++ RG +D +G + G ++ + L A++ES + +
Sbjct: 765 RRDTPIVLTRLIQEIEKRG-----VDYSGLYVLCGSVEKKKMLRAELESNPLGTELAAES 819
Query: 183 LEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARAGKV 290
+ D+ +++ L L +L PL+ ++HG L A V
Sbjct: 820 IPDTNVIACLIKDFLRELPEPLISPQIHGMLLEAASV 856
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +3
Query: 6 RRHEAFLIRRYKMQLHIRGQSTHVLDVNGQESI-GDIKNRLRLLADVESEEVTLSMCGAP 182
RR ++ R ++ RG +D +G + G ++ + L A++ES + +
Sbjct: 697 RRDTPIVLTRLIQEIEKRG-----VDYSGLYVLCGSVEKKKMLRAELESNPLGTELAAES 751
Query: 183 LEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARAGKV 290
+ D+ +++ L L +L PL+ ++HG L A V
Sbjct: 752 IPDTNVIACLIKDFLRELPEPLISPQIHGMLLEAASV 788
>AF036705-9|AAO91724.1| 686|Caenorhabditis elegans Hypothetical
protein F37C4.2 protein.
Length = 686
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 361 ILRLARPVLFFFFCCFSTLGVWPLTLPA 278
IL+ ++PV +F + V+P TLPA
Sbjct: 257 ILKFSQPVSYFALVILLAINVFPFTLPA 284
>Z81043-4|CAB02798.1| 179|Caenorhabditis elegans Hypothetical
protein C29F3.5 protein.
Length = 179
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 340 VLFFFFCCFSTLGVWPLTLPARARDPCTLP 251
++F FFC FS G P+T P +P +P
Sbjct: 6 IIFAFFCMFSVEGCIPMTPP---EEPVVVP 32
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,121,340
Number of Sequences: 27780
Number of extensions: 208384
Number of successful extensions: 638
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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