Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H10
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   3.4  
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    25   4.5  
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos...    25   6.0  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   6.0  
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.9  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 143  TSRPTTSATMRTGSACPVGTAACTTASISDRYTLS 247
            T  PT+S T  + ++   GTA+ T A+ +   TLS
Sbjct: 1088 TGSPTSSVTAVSSTSSVEGTASSTIAAAASAATLS 1122


>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 372 PGPLRPLFRSVGSGQVLLEPLILVDDELEPILGEVVNLGGYRDKVYRSDIE 220
           PGP  P +  VG+G+V      +V+   +  L   +N+ G   +V  S  E
Sbjct: 156 PGPQGPFYCGVGTGRVFARD--IVEAHYKACLYAGINISGINAEVMPSQWE 204


>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
           Caf16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 310 EWLKEDLSRANTPEKRSQRPW 372
           EWLKED     T E+  +  W
Sbjct: 236 EWLKEDKKNRGTREEEKRSTW 256


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
 Frame = -1

Query: 366 PLRPLFRSVGSGQVLLEPLILVD--DELEPILGEVVNLG-GYRDKVYRSDIEAVVQAAVP 196
           P  P   S+GS    L   I +D  D  E    +   L  G    ++R+    V +  V 
Sbjct: 602 PFNPKDPSMGSRSAFLTKHIYIDRSDFREEASSDFFRLTLGQPVGLFRASHPVVAKRVVK 661

Query: 195 TGHAEPVRIVAE 160
               EP+ I+AE
Sbjct: 662 NDEGEPIEIIAE 673


>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 132

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 52  DTDDARVGDEFM--RQIQPLAALVPYMTCPGNHEQA 153
           DTD++ V DEFM  ++  P+ AL    T   + E A
Sbjct: 78  DTDESAVSDEFMQIKEEFPMKALSASPTADASPESA 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,997
Number of Sequences: 5004
Number of extensions: 37751
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)