Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H10
         (483 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK131245-1|BAD18425.1|  438|Homo sapiens protein ( Homo sapiens ...   209   3e-54
AK126701-1|BAC86649.1|  173|Homo sapiens protein ( Homo sapiens ...    29   6.5  

>AK131245-1|BAD18425.1|  438|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16165 fis, clone BRCOC2019841. ).
          Length = 438

 Score =  209 bits (511), Expect = 3e-54
 Identities = 92/161 (57%), Positives = 120/161 (74%), Gaps = 3/161 (1%)
 Frame = +1

Query: 10  FDLILHVGDFAYDMDTDDARVGDEFMRQIQPLAALVPYMTCPGNHEQAYNFSNYANRFSM 189
           +D +LHVGDFAY++D D+ARVGD FMR I+P+AA +PYMTCPGNHE+ YNFSNY  RFSM
Sbjct: 162 YDAVLHVGDFAYNLDQDNARVGDRFMRLIEPVAASLPYMTCPGNHEERYNFSNYKARFSM 221

Query: 190 PGRDGSLYYSFDIGPIHFVSISTEVYYFTQYGLKLIVNQYEWLKEDLSRANTPEKRSQRP 369
           PG +  L+YS+D+GP H +S STEVY+F  YG  L+  Q+ WL+ DL +AN  + R+ RP
Sbjct: 222 PGDNEGLWYSWDLGPAHIISFSTEVYFFLHYGRHLVQRQFRWLESDLQKAN--KNRAARP 279

Query: 370 WVVVFGHRPMYCSNSNDIDCS--VEYTRTGIFG-MYGLETL 483
           W++  GHRPMYCSN++  DC+      R G+ G +YGLE L
Sbjct: 280 WIITMGHRPMYCSNADLDDCTRHESKVRKGLQGKLYGLEDL 320


>AK126701-1|BAC86649.1|  173|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44747 fis, clone BRACE3028998, moderately
           similar to D-beta-hydroxybutyrate dehydrogenase
           precursor (EC 1.1.1.30). ).
          Length = 173

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 389 CPNTTTQGRCDLFSGVLALDKSSLSHS-YWLT 297
           CP T       LFSG L LD    SHS YWLT
Sbjct: 25  CP-TKVASELALFSGRLFLDSGKHSHSKYWLT 55


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,781,687
Number of Sequences: 237096
Number of extensions: 1520110
Number of successful extensions: 3771
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3767
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4327667848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)