Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_H09
(543 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ... 27 1.4
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 27 1.8
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 4.1
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 26 4.1
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 26 4.1
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 25 5.5
SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transf... 25 5.5
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 25 7.2
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S... 25 9.5
>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 481
Score = 27.5 bits (58), Expect = 1.4
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 290 NELNAASGKL-SSINELADQALKRAKVVYEEALGLYAEVNTTLLPDIKLR 436
N+LN +L SS+ L D L A + E LYA V+ T L D+K R
Sbjct: 151 NQLNVLHDRLESSLKRLRDCTLDPA--LGSEYTNLYAFVDDTALEDLKTR 198
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 143 LLAEKLENEARNIRDIADKAFNTSLVANKIAKDGITKQANISN 271
L AEKLEN+A++ + I KA + + + K+ + + + N
Sbjct: 346 LEAEKLENQAQHKKRIIKKALEFNPTSVSLWKEAVNLEEEVDN 388
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 224 NKIAKDGITKQANISNEV---QILTNELNAASGKLSSINELADQALK 355
+K+ K + K + NE Q++T SGK + +N +AD+A K
Sbjct: 359 DKLPKQHLFKYRPVDNEATYCQVVTVTGEKGSGKSNLLNAVADEARK 405
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 25.8 bits (54), Expect = 4.1
Identities = 24/130 (18%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Frame = +2
Query: 74 ARNRSDQFGKQSVDMSALAKESRLLAEKLENEARNIRDIADKAFNTSLVANKIAK----- 238
+R+R + ++ + +L + A I++ +KA+N + +I+
Sbjct: 265 SRSRQSSLSSRLSELPSKRASLEILRRENTFPADPIQEFGEKAYNERELMEEISNFEPLL 324
Query: 239 -DGITKQANISNEVQILTNELNAASGKLSSINELADQALKRAK-VVYEEALGLYAEVNTT 412
D + + AN + ++ ++A S +E + L + K +++ Y++ +T
Sbjct: 325 DDNLLENANEAVNSPVVDAPMDADSALEIPNDEDNGEILNKLKDSPFKKPKRRYSKSSTL 384
Query: 413 LLPDIKLRKL 442
+LP+ +RKL
Sbjct: 385 VLPETNIRKL 394
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 346 GFETSKGSLRRGTGTIRGGQHHSSPGH 426
GFET G L + G G + HS P H
Sbjct: 221 GFETYYGVLTKCAGASLGMRLHSGPSH 247
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 5.5
Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 1/124 (0%)
Frame = +2
Query: 14 KEISSA-MEYXXXXXXXXXXKARNRSDQFGKQSVDMSALAKESRLLAEKLENEARNIRDI 190
KE SS EY +S + SV + L L ++ + ++
Sbjct: 38 KERSSIEKEYAQKLASLSNKYGEKKSRKSSALSVGDTPAMSAGSLECASLTTWSKILDEL 97
Query: 191 ADKAFNTSLVANKIAKDGITKQANISNEVQILTNELNAASGKLSSINELADQALKRAKVV 370
+ +++ + D K + + ++ L + K SS E ++KRAKV
Sbjct: 98 TRSSKTHQKLSDDYSLDIAEKLKKLESHIEALRKVYDDLYKKFSSEKETLLNSVKRAKVS 157
Query: 371 YEEA 382
Y EA
Sbjct: 158 YHEA 161
>SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transfer
protein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 185 DIADKAFNTSLVANKIAKDGITKQANIS 268
DI DKA+ + V + ITKQA IS
Sbjct: 116 DICDKAYELAAVECPVEPGIITKQATIS 143
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/68 (22%), Positives = 29/68 (42%)
Frame = +2
Query: 131 KESRLLAEKLENEARNIRDIADKAFNTSLVANKIAKDGITKQANISNEVQILTNELNAAS 310
K +LL E + N+ D ++ + N + +TK IS+ + ++N
Sbjct: 156 KNKKLLREHMNNKRHFRLDPKSSEYDEFYIINYAS---VTKSITISHSQFAINEDINETD 212
Query: 311 GKLSSINE 334
+S IN+
Sbjct: 213 DTISDIND 220
>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
L3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 326
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +3
Query: 390 YTRRSTPLFSRT*NLENYTRIHW 458
+ RST F R+ ++++Y R+ W
Sbjct: 3 FISRSTTTFRRSISMKDYARVRW 25
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,746
Number of Sequences: 5004
Number of extensions: 31916
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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