Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_H08
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 266 1e-71
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 264 3e-71
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 264 5e-71
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 31 0.57
03_05_0145 + 21254448-21255488 29 2.3
01_01_1101 + 8731427-8732938 29 2.3
01_05_0674 - 24187820-24188713,24188809-24189204 29 3.0
10_08_0510 + 18430580-18431781,18433176-18433554 29 4.0
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 29 4.0
01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759 29 4.0
01_05_0710 + 24492337-24493053 29 4.0
12_01_0843 + 7891622-7892524 28 7.0
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699... 28 7.0
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 7.0
04_04_0950 + 29609484-29611025 27 9.2
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 266 bits (652), Expect = 1e-71
Identities = 124/200 (62%), Positives = 152/200 (76%)
Frame = +3
Query: 24 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 203
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 204 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 383
+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKF 137
Query: 384 KLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIIGLHQVRLRQPL 563
KLCKVR V G K +P+L T+DGRT+RYPDPLIK ND++++D+ TNKI+ + + +
Sbjct: 138 KLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIV 197
Query: 564 HDHRRQESGSRRHIVSRERH 623
+ +G I SRE+H
Sbjct: 198 MVTGGRNTGRVGVIKSREKH 217
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 264 bits (648), Expect = 3e-71
Identities = 121/201 (60%), Positives = 153/201 (76%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 381 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIIGLHQVRLRQP 560
+KLCKVR V G K +PYL T+DGRT+RYPDPLIK ND++++D+ TNKI+ + +
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNV 180
Query: 561 LHDHRRQESGSRRHIVSRERH 623
+ + +G I +RE+H
Sbjct: 181 VMVTGGRNTGRVGVIKNREKH 201
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 264 bits (646), Expect = 5e-71
Identities = 120/201 (59%), Positives = 153/201 (76%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 381 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIIGLHQVRLRQP 560
+KLCKVR V G K +PYL T+DGRT+RYPDP+IK ND++++D+ TNKI+ + +
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNV 180
Query: 561 LHDHRRQESGSRRHIVSRERH 623
+ + +G I +RE+H
Sbjct: 181 VMVTGGRNTGRVGVIKNREKH 201
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 31.5 bits (68), Expect = 0.57
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 450 GRTLRYPDPLIKVNDSVQLDIS-TNKIIGLHQVRLRQPLHDHRRQESGSRRHIVSRERH 623
G LR P VND +L I T ++ + R + HDH+ Q R H R+RH
Sbjct: 91 GAELRRRVPTCHVNDFPELGIGGTPVLVRRWRPRDHRDQHDHQSQRHHHRHHHHQRQRH 149
>03_05_0145 + 21254448-21255488
Length = 346
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 392 QGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHL 514
+G ARR P++R A A P PA R G HL
Sbjct: 117 KGRARRRTPEQRRPKEAAGNGRARSPSPASAQRRYGGGEHL 157
>01_01_1101 + 8731427-8732938
Length = 503
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 206 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 72
+HL+ L P H R A A L+ + R P R HAA LV+ HP
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75
>01_05_0674 - 24187820-24188713,24188809-24189204
Length = 429
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 398 AARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQD 526
AA R P A A AP P P+HQ ++ +RH D
Sbjct: 149 AANRRAPAAAAKHRPAADQFAPPPAPSHQWAKIKRSRHATDHD 191
>10_08_0510 + 18430580-18431781,18433176-18433554
Length = 526
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 529 MILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 380
M L + CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 193 MDYLCKNGRCTEARKIFDSMTKRGLKPD-ITTYGTLLQGYATKGALVEMH 241
>10_08_0509 +
18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 529 MILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 380
M L + CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPE-ITTYGTLLQGYATKGALVEMH 359
>01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759
Length = 428
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 389 VQGAARRDRPQERAVPGDARRAHAPVPG 472
++GA RR R E+A+P + AP PG
Sbjct: 4 LRGAKRRKRQPEKALPAAGQAMPAPAPG 31
>01_05_0710 + 24492337-24493053
Length = 238
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -2
Query: 520 LVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWI 350
L M + T +F L++ + +RPS + LLG + +RR ++ V+RW+
Sbjct: 93 LASMPTLTPAFALLTAIRHHPLRPSPLPLATPLLGHLLSRRRARE----AASVVRWL 145
>12_01_0843 + 7891622-7892524
Length = 300
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 371 RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGE 490
R V G R +P++ A AHAP P P+ G+
Sbjct: 37 RKAVSGSGGGRRGRKPKKAATAATLAPAHAPAPAPSVAGK 76
>06_01_0906 +
6990892-6991615,6992480-6992679,6992822-6993002,
6993855-6994046,6994492-6994724,6995537-6995638,
6995776-6995826,6996234-6996338,6997287-6997353,
6997946-6997962
Length = 623
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 386 AVQGAARRDRPQERAVPGDARRA-HAPVPGPAHQGERLGAA 505
A +G R+ R P DA A HAP P P +G + GAA
Sbjct: 98 APRGRGRKSRRGRPEPPSDAGAAPHAP-PSPPRRGAKKGAA 137
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 315 FRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGP 419
+ LIYD++G + + P++A L + V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 220 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 92
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,065,567
Number of Sequences: 37544
Number of extensions: 387318
Number of successful extensions: 1387
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -