Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H08
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   239   1e-63
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr...    31   0.67 
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr...    31   0.67 
L23648-5|AAN63385.1|  381|Caenorhabditis elegans Cyclin t protei...    30   1.6  
L23648-4|AAA28033.2|  555|Caenorhabditis elegans Cyclin t protei...    30   1.6  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    29   2.1  
M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical pr...    29   2.7  
M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical ...    29   2.7  
AY551964-1|AAS65428.1|  795|Caenorhabditis elegans enhancer of p...    28   6.3  
AL132904-22|CAC35840.2|  795|Caenorhabditis elegans Hypothetical...    28   6.3  
Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    27   8.3  
AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine re...    27   8.3  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  239 bits (585), Expect = 1e-63
 Identities = 110/167 (65%), Positives = 131/167 (78%)
 Frame = +3

Query: 27  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 206
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 207 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 386
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +K
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121

Query: 387 LCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKI 527
           LCKV+ V T  K VP L T DGRT+RYPDP +KVND++  +IST KI
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKI 168



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +1

Query: 532 DFIKFDSGNLCMITGGRNLGRVG 600
           D +KF+ GNL  +TGGRN+GRVG
Sbjct: 170 DSVKFEPGNLAYVTGGRNVGRVG 192


>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -2

Query: 376 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 218
           A+S  +R +V+  F   I+ +   +FS + T +NP+G   S R  P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214


>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -2

Query: 376 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 218
           A+S  +R +V+  F   I+ +   +FS + T +NP+G   S R  P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214


>L23648-5|AAN63385.1|  381|Caenorhabditis elegans Cyclin t protein
           1.2, isoform b protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 608 DDVPTRPRFLPPVIMQRLPESNLMKSNDLVGGDVELHRVVH 486
           D   TRP FLP V  Q++ E  LM+         ++HR  H
Sbjct: 154 DSPSTRPSFLPDVKNQKVVEQELMEQRMKEAAQQKIHRNGH 194


>L23648-4|AAA28033.2|  555|Caenorhabditis elegans Cyclin t protein
           1.2, isoform a protein.
          Length = 555

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 608 DDVPTRPRFLPPVIMQRLPESNLMKSNDLVGGDVELHRVVH 486
           D   TRP FLP V  Q++ E  LM+         ++HR  H
Sbjct: 328 DSPSTRPSFLPDVKNQKVVEQELMEQRMKEAAQQKIHRNGH 368


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +3

Query: 339 GRFTIHRITPEEAKYKLCKVRRVATGPKSVP-----YLVTHDGRTLR-YP 470
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R ++ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical
           protein ZK370.3b protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -1

Query: 245 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 153
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical
           protein ZK370.3a protein.
          Length = 927

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -1

Query: 245 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 153
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical
           protein Y71A12B.6 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 334 TSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMR 224
           T+     N F FS  T S+NP GY+  V     TL +
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272


>AY551964-1|AAS65428.1|  795|Caenorhabditis elegans enhancer of
           polycomb protein.
          Length = 795

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 626 RVALARDDVPTRPRFLPPVIMQ-RLPESNLMKSNDLVGGDVE 504
           R AL   +VPT P  +PPV  Q  +  S+  KS D+V  +++
Sbjct: 397 RAALTVYNVPTAPATVPPVQTQAAVASSSSSKSTDMVPSNMK 438


>AL132904-22|CAC35840.2|  795|Caenorhabditis elegans Hypothetical
           protein Y111B2A.11 protein.
          Length = 795

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 626 RVALARDDVPTRPRFLPPVIMQ-RLPESNLMKSNDLVGGDVE 504
           R AL   +VPT P  +PPV  Q  +  S+  KS D+V  +++
Sbjct: 397 RAALTVYNVPTAPATVPPVQTQAAVASSSSSKSTDMVPSNMK 438


>Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical
           protein T11F9.10 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 352 STVSHLK-KPSTSCARCGASRP 414
           +TV HL  +P TSCA C ++RP
Sbjct: 19  TTVLHLHIRPPTSCATCTSNRP 40


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -2

Query: 406 TRRTLHSLYL--ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGY 263
           T R    LYL       I +I+ L   S++K NNSF+F      I+   Y
Sbjct: 15  TWRLYDPLYLIFCIPATIHYIIVLKVVSHLKENNSFLFIFTILGISDIFY 64


>AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein45 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = -2

Query: 346 NLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRF 167
           N     YI+ +    F +D+T  N  G + SV ++ +T      TI  +++ +++  S F
Sbjct: 156 NFELLQYIREDFQETFGLDSTEFNMVGALFSVGSYETTHRAWIATISWSAVSIASITSFF 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,146,408
Number of Sequences: 27780
Number of extensions: 291225
Number of successful extensions: 957
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)