Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H07
         (298 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    26   1.0  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    25   2.4  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   3.1  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   3.1  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    25   3.1  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    24   5.5  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    24   5.5  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    23   7.3  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    23   7.3  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    23   7.3  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    23   9.6  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    23   9.6  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    23   9.6  

>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 4/28 (14%)
 Frame = +3

Query: 123 IHSTERRPLLNVSLPQ----RSPRRPVL 194
           +HS   +PLLN +LP+    +SP++PV+
Sbjct: 657 VHSFPTQPLLNNNLPRMFFVKSPKKPVV 684


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 164 PPKIATTTGLAPSASIGLSRHG 229
           PP  AT TG   S SIGLS  G
Sbjct: 306 PPSRATLTGGYASGSIGLSTPG 327


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 219 ESPMDADGARPVVVAIFGGDLRSEVDAFRLS 127
           +SP   D   P+V       LRSE+DAFR S
Sbjct: 672 QSPDPTDRQSPIVTQ----QLRSEIDAFRQS 698


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 138 FRLSG*MDGWINFCFNVNY 82
           FR+ G    W NFCF++ +
Sbjct: 242 FRIKGRYIEWQNFCFHIGF 260


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 150 LNVSLPQRSPRRPVLRHPHPSDSRDM 227
           L   +PQ +PRR VL H    +  DM
Sbjct: 586 LKTIIPQVNPRRLVLIHASTEEKEDM 611


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 131 NRKASTSERKSPPKIATTTGLAPSASIG 214
           NRK  ++ R++P K   +  L PS+S G
Sbjct: 45  NRKRVSTTRRTPSKPIRSQPLTPSSSKG 72


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 278 IFQFKKNMD--KTKIMSNVHVARVRWMRMAQDRSSWRSLGETYVQK 147
           +F +   +D  K K+MS       RW R+ +D   W++L   Y+QK
Sbjct: 84  VFSYLDQLDLCKCKLMSK------RWKRLLEDPGIWKAL---YMQK 120


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 116 SIHPLNRKASTSERKSPPKIATTTGLA 196
           ++H +   + +SE K  P + TTT ++
Sbjct: 589 NVHEIREPSFSSEHKPQPSLKTTTDVS 615


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 175 DLWGRLTFRSGRLSVEWMNGWMDQF 101
           +LW R+   S     E+ NGW+++F
Sbjct: 111 ELWRRIPEYSELPIPEFSNGWLEKF 135


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 86  LTLKQKLIHPSIHPLNRKASTSERKSPPKIATTTGLAP 199
           LT+ + L+HP ++PL    +   +K  P    T    P
Sbjct: 592 LTIPELLVHPFLNPLPSYLTPLAKKPLPVSGHTNNAHP 629


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -1

Query: 259 TWIRPKSCLMSMSRESDGCGWRKTGRRGDLWGRLTFRSGRLSVEW 125
           TW   +  L+S S ++  C WR     GD W       G  +  W
Sbjct: 430 TWHPTEDLLVSGSYDNSICFWRDD---GDDWALTCQLQGHTNTVW 471


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 283  SQFFNLKRTW 254
            S+FFNLKR W
Sbjct: 1041 SEFFNLKRFW 1050


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
 Frame = -3

Query: 209 WMRMAQ----DRSSWRSLGETYVQKWTPF 135
           WM M +    DRS+W+S+ E + + +T F
Sbjct: 44  WMLMLEFLPTDRSNWQSVLEKHRKTYTSF 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,331,667
Number of Sequences: 5004
Number of extensions: 25765
Number of successful extensions: 68
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)