Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_H07
(298 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0231 - 16636377-16636403,16636590-16636645,16636793-166368... 29 0.49
09_02_0625 + 11334418-11334499,11335067-11335164,11335758-113358... 29 0.86
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 29 0.86
02_01_0264 - 1748883-1748888,1748943-1749017,1749453-1749868,175... 29 0.86
05_03_0003 - 7298555-7298841,7299199-7299386,7299484-7299683,729... 28 1.1
10_02_0126 - 5543658-5543670,5543748-5543840,5544344-5544529,554... 28 1.5
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743... 28 1.5
08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831 27 2.0
01_03_0015 + 11669321-11670070 27 2.0
01_07_0139 - 41385823-41386656 27 2.6
10_01_0069 + 890634-890941,892146-892395,893146-893175,894956-89... 27 3.5
04_04_1647 + 35032328-35033803 27 3.5
01_06_0633 - 30741716-30742432 27 3.5
12_01_0970 + 9776851-9778610,9779519-9779643,9779698-9779768,978... 26 4.6
05_05_0041 + 21793872-21794186 26 4.6
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 26 4.6
10_08_0482 + 18218163-18218362,18220388-18220446,18223027-182230... 26 6.0
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250... 26 6.0
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 26 6.0
03_02_0269 + 7001891-7002212,7003598-7004037 26 6.0
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 26 6.0
12_02_1053 + 25704123-25704313,25704378-25704812,25705760-257059... 25 8.0
10_02_0068 + 4888273-4889266,4889375-4889397 25 8.0
03_05_0315 - 23040153-23040325,23040717-23041051,23041201-23041289 25 8.0
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982... 25 8.0
01_07_0349 + 42939178-42939551,42939752-42939904,42940289-42940982 25 8.0
>02_03_0231 -
16636377-16636403,16636590-16636645,16636793-16636853,
16637590-16637649,16638007-16638096,16638775-16638906,
16639016-16639293,16639916-16639949,16640036-16640105,
16641170-16641282,16641654-16641836,16642106-16642283,
16642958-16643142,16643347-16643477,16643620-16643772,
16643849-16643995,16644662-16644737
Length = 657
Score = 29.5 bits (63), Expect = 0.49
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 107 IHPSIHPLNRKASTSERKSPPKIATTTGLAPSASIG 214
++ S P + +STSER + +A GL+PS+S+G
Sbjct: 467 VNSSQGPGSSTSSTSERIAASSVACAPGLSPSSSMG 502
>09_02_0625 +
11334418-11334499,11335067-11335164,11335758-11335831,
11335996-11336598,11336692-11337185,11338035-11338170,
11338417-11338488,11338581-11338652,11339078-11339226,
11340129-11340364,11340567-11340693,11341011-11341079,
11341172-11341361,11341465-11341857,11342084-11342195
Length = 968
Score = 28.7 bits (61), Expect = 0.86
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 117 PFIHSTERRPLLNVSLPQRSPRRPVLRHPHPSDSRDMDIRH 239
PFI S E RP+ + + P +P P+L S IR+
Sbjct: 247 PFISSLEMRPMKSSNYPAATPNHPLLLQDRRSMGASRIIRY 287
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 28.7 bits (61), Expect = 0.86
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 125 PLNRKASTSERKSPPKIATTTGLAPSASIGLSRHG 229
PL ++A+ E KSP + T P +G+S+ G
Sbjct: 355 PLAKRANLLESKSPDGVGQTFRAQPGVKLGISKDG 389
>02_01_0264 -
1748883-1748888,1748943-1749017,1749453-1749868,
1750095-1750215,1750423-1750533,1750636-1750737,
1750896-1750989,1751145-1751194,1751323-1751424,
1751794-1751871,1751999-1752028,1752322-1753050
Length = 637
Score = 28.7 bits (61), Expect = 0.86
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 95 KQKLIHPSIHPLNRKASTSERKSPP 169
++K+ HP + PL+ + STSE K+PP
Sbjct: 412 REKIEHPQMSPLH-EMSTSESKAPP 435
>05_03_0003 -
7298555-7298841,7299199-7299386,7299484-7299683,
7299774-7300038,7302403-7302512
Length = 349
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 216 SPMDADGARPVV-VAIFGGDLRSEVDAFRLSG*MDGWINFCFNVNYKCLLR 67
+P+ G P + V++F L + + A L GW++F VNYK +R
Sbjct: 108 NPVKYHGKWPFIRVSVFQEPLSAALSAVNLLMHFTGWLSFFLLVNYKLPVR 158
>10_02_0126 -
5543658-5543670,5543748-5543840,5544344-5544529,
5544613-5545310,5545323-5546237,5546842-5547081
Length = 714
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 296 GKTNQSIFQFKKNMDKTKIMSNVHVARVRWMRMAQDRSSWRSL 168
GKT + I ++KK + K K+++ HV R R D + SL
Sbjct: 657 GKTPKEIAEYKKGLHKEKLITVTHVTSNREERSFADITLANSL 699
>07_03_1027 -
23371826-23372006,23372110-23372171,23372595-23374335,
23374609-23374704,23374967-23375043,23376807-23377307
Length = 885
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 284 QSIFQFK-KNMDKTKIMSNVHVARVRWMRMAQDRSSWRSLG 165
+ IF+ + K+M I+SN++ A RW AQ R S R G
Sbjct: 699 KKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKG 739
>08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831
Length = 757
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -1
Query: 253 IRPKSCLMSMSRESDGCGWRKTGRRGDLWGRLTFRSGRLSVE-WMNGWMDQF 101
I P L +RE G G + + GR G+ + E W NGW QF
Sbjct: 442 IAPAVKLDICAREGGGGGGQGAAAAAAVAGRRRRGGGKAAAEQWTNGWWAQF 493
>01_03_0015 + 11669321-11670070
Length = 249
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = -2
Query: 231 CP-CR---ESPMDADGARPVVVAIFGGDLRS 151
CP CR E+P DADGA+P V GD S
Sbjct: 185 CPLCRADVEAPYDADGAQPEVRIDIAGDAPS 215
>01_07_0139 - 41385823-41386656
Length = 277
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 238 CLMSMSRESDGCGWRKTGRRGDLWG 164
CL S G WR +GRR WG
Sbjct: 249 CLGCTSARGRGSPWRTSGRRPSWWG 273
>10_01_0069 +
890634-890941,892146-892395,893146-893175,894956-895135,
895418-895669
Length = 339
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = -3
Query: 263 KNMDKTKIMSNVHVARVRWMRMAQDRSS------WRSLGETYVQKWTPFG*VDEWMDGSI 102
K+ +K+++ N+ + W DR WR + +V K P+ VDE+ DG I
Sbjct: 272 KSFNKSRLRENLGI--FDWELTNDDRHKISTLPEWRGTLDIFVHKTGPYKTVDEFWDGEI 329
>04_04_1647 + 35032328-35033803
Length = 491
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +2
Query: 110 HPSIHPLNRKASTSERKSP----PKIATTTGLAPSASIGLSRHGH 232
HP HPL+R A+ S ++ P+ + G AP S+ S + H
Sbjct: 40 HPHHHPLSRLAAASLARAAHLARPRPRSRQGTAPPPSVRASLYPH 84
>01_06_0633 - 30741716-30742432
Length = 238
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 122 HPLNRKASTSERKSPPKIATTTGLAPSASIGL 217
H L R AS S +S ++A G +PS+ +GL
Sbjct: 125 HLLPRLASPSSPRSSLRVAAAPGWSPSSVLGL 156
>12_01_0970 +
9776851-9778610,9779519-9779643,9779698-9779768,
9780158-9780586
Length = 794
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 242 IMSNVHVARVRWMRMAQDRSSWRS 171
++SNV+ ++ RWM + + R + RS
Sbjct: 423 LLSNVYASKARWMDVGRVRDTMRS 446
>05_05_0041 + 21793872-21794186
Length = 104
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 262 RTWIRPKSCLMSMSRESDGCGWRKTGRR 179
R W+R + CL + DGCG G R
Sbjct: 48 RRWMRRRQCLEMDAAAGDGCGGDGDGIR 75
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 129 STERRPLLNVSLPQRSPRRPVLRHPHP 209
S +RR L+ PQRS RR V+ +P
Sbjct: 385 SGQRRELMGTITPQRSSRREVMGSSNP 411
>10_08_0482 +
18218163-18218362,18220388-18220446,18223027-18223083,
18223245-18223279,18223617-18223720,18223870-18223945,
18224045-18224103,18224183-18224248,18224338-18224421,
18224503-18224567,18224658-18224740,18224832-18224903,
18225166-18225306,18225395-18225456,18225539-18225605,
18225863-18226075
Length = 480
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 208 GCGWRKTGRRGDLWGRLTFRS 146
G WR TG D WG +T R+
Sbjct: 232 GNSWRTTGDIADNWGSMTSRA 252
>08_01_0304 -
2502760-2502774,2502844-2502921,2503035-2503103,
2503200-2503289,2503400-2503517,2505548-2505678,
2505756-2506025,2507175-2507308,2507635-2508088
Length = 452
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 164 PPKIATTTGLAPSASIGLSRHGH 232
PPK+ ++ G+APS S G H
Sbjct: 2 PPKLRSSKGVAPSPSTGEGGESH 24
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 108 SIHPFIHSTERRPLLNVSLPQRSPRRPVLRHPHPSDSRDMDIR 236
S H + T P+ + PQ +P RPV P P R +R
Sbjct: 195 SQHSTLEQTAMPPMAAPAPPQTNPPRPVRPPPPPPPPRQRLLR 237
>03_02_0269 + 7001891-7002212,7003598-7004037
Length = 253
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -1
Query: 268 LKRTWIRPKSCLMSMSRESDGCGWRKTGRRGDLWGRLTFRSGRLSVEWMNGWMD 107
++R W+ ++ +R G + RG GR R+ V W +GW+D
Sbjct: 27 MRRRWLG-NGAGVAAARPGKGGDDGSSDVRGREGGRTEHARQRMRVAWADGWVD 79
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 198 HPHPSDSRDMDIRHDFG 248
HP P+++ D D+R+D G
Sbjct: 11 HPEPANNIDADLRYDLG 27
>12_02_1053 +
25704123-25704313,25704378-25704812,25705760-25705913,
25706143-25706229
Length = 288
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -1
Query: 256 WIRPKSCLMSMSRESDGCGWRK----TGRRGDLWGRLTFRS 146
W+ P S + + + DG G R R LWGR+T RS
Sbjct: 64 WLEP-SAVRGPNEDPDGDGGRPHPRYQSRSRSLWGRITGRS 103
>10_02_0068 + 4888273-4889266,4889375-4889397
Length = 338
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 147 LLNVSLPQRSPRRPVLRHPHPSDSRDMDIRHDFG 248
+ V++ QRSPRR + P D+ I + FG
Sbjct: 25 MTTVAVDQRSPRRRIALPGCPDKCGDISIPYPFG 58
>03_05_0315 - 23040153-23040325,23040717-23041051,23041201-23041289
Length = 198
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 220 RESDGCGWRKTGRRGDLWGRLTFRSG 143
+E DGC WR +G L G L SG
Sbjct: 117 KEKDGCPWRVHVYKGKLEGLLDSVSG 142
>03_02_0609 -
9823120-9823573,9823903-9824102,9824240-9824335,
9824454-9824567,9824711-9824774,9825206-9825312
Length = 344
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 108 SIHPFIHSTERRPLLNVSLPQRSPRRPVLRHPHPSDSRDMD 230
SI P + ER P N RSP+ V P +D R+ D
Sbjct: 228 SISPAANGKERNPSPNGRRSPRSPQDRVSPPPKDNDERNGD 268
>01_07_0349 + 42939178-42939551,42939752-42939904,42940289-42940982
Length = 406
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 295 EKPISQFFNLKRTWIRPKSCLMSMSRESDGCGWRKTGRR 179
EK +S+ K T ++ KSC + DG WRK G++
Sbjct: 130 EKTLSKTMENKYT-LKMKSCGNNGGLADDGYKWRKYGQK 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,669,274
Number of Sequences: 37544
Number of extensions: 176007
Number of successful extensions: 744
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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