Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H07
         (298 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064401-1|AAH64401.1|  547|Homo sapiens TJAP1 protein protein.        29   2.7  
BC046239-1|AAH46239.1|  557|Homo sapiens TJAP1 protein protein.        29   2.7  
AL355802-3|CAI42618.1|  557|Homo sapiens RP3-337H4.1 protein.          29   2.7  
AL355802-2|CAI42619.1|  547|Homo sapiens RP3-337H4.1 protein.          29   2.7  
AK024269-1|BAB14867.1|  547|Homo sapiens protein ( Homo sapiens ...    29   2.7  
AL121829-14|CAC15526.1|  488|Homo sapiens protein ( ne kinase, t...    28   6.2  
BC043145-1|AAH43145.1| 1634|Homo sapiens leucine rich repeat con...    27   8.2  
AB011135-1|BAA25489.3| 1652|Homo sapiens KIAA0563 protein protein.     27   8.2  

>BC064401-1|AAH64401.1|  547|Homo sapiens TJAP1 protein protein.
          Length = 547

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 117 PFIHSTERR--PLLNVSLPQRSPRRPVLRHPHPSDS 218
           P    TE R  PL + S PQRSP+R  + H H  DS
Sbjct: 500 PGTSHTEGRAWPLPSSSRPQRSPKRMGVHHLHRKDS 535


>BC046239-1|AAH46239.1|  557|Homo sapiens TJAP1 protein protein.
          Length = 557

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 117 PFIHSTERR--PLLNVSLPQRSPRRPVLRHPHPSDS 218
           P    TE R  PL + S PQRSP+R  + H H  DS
Sbjct: 510 PGTSHTEGRAWPLPSSSRPQRSPKRMGVHHLHRKDS 545


>AL355802-3|CAI42618.1|  557|Homo sapiens RP3-337H4.1 protein.
          Length = 557

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 117 PFIHSTERR--PLLNVSLPQRSPRRPVLRHPHPSDS 218
           P    TE R  PL + S PQRSP+R  + H H  DS
Sbjct: 510 PGTSHTEGRAWPLPSSSRPQRSPKRMGVHHLHRKDS 545


>AL355802-2|CAI42619.1|  547|Homo sapiens RP3-337H4.1 protein.
          Length = 547

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 117 PFIHSTERR--PLLNVSLPQRSPRRPVLRHPHPSDS 218
           P    TE R  PL + S PQRSP+R  + H H  DS
Sbjct: 500 PGTSHTEGRAWPLPSSSRPQRSPKRMGVHHLHRKDS 535


>AK024269-1|BAB14867.1|  547|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14207 fis, clone NT2RP3003185, weakly similar to
           TROPOMYOSIN 1, FUSION PROTEIN 33. ).
          Length = 547

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 117 PFIHSTERR--PLLNVSLPQRSPRRPVLRHPHPSDS 218
           P    TE R  PL + S PQRSP+R  + H H  DS
Sbjct: 500 PGTSHTEGRAWPLPSSSRPQRSPKRMGVHHLHRKDS 535


>AL121829-14|CAC15526.1|  488|Homo sapiens protein ( ne kinase, the
           PTK6 gene for  ).).
          Length = 488

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 138 RRPLLNVSLPQRSPRRPVLRHPH 206
           + PLL   +PQ++PR+ V   PH
Sbjct: 205 QNPLLQPCMPQKAPRQDVWERPH 227


>BC043145-1|AAH43145.1| 1634|Homo sapiens leucine rich repeat
           containing 37, member A3 protein.
          Length = 1634

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 113 PSIHPLNRKASTSERKSPPKIATTTGLAPSASIGLS 220
           P  H  +  AS S    PP +  T    PSA +G S
Sbjct: 397 PGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTS 432


>AB011135-1|BAA25489.3| 1652|Homo sapiens KIAA0563 protein protein.
          Length = 1652

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 113 PSIHPLNRKASTSERKSPPKIATTTGLAPSASIGLS 220
           P  H  +  AS S    PP +  T    PSA +G S
Sbjct: 415 PGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTS 450


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,782,823
Number of Sequences: 237096
Number of extensions: 900387
Number of successful extensions: 2255
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2254
length of database: 76,859,062
effective HSP length: 75
effective length of database: 59,076,862
effective search space used: 1358767826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)