Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H06
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    28   0.98 
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             27   1.7  
SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   2.3  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   3.0  

>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 459 RPRRELPVILNNDQFNSIQTS*DRIIIRH 373
           R R+E PV++ N   N I +  DR+++RH
Sbjct: 103 RGRKEKPVVIVNAAENDIGSFKDRLLLRH 131


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 153 DRLKLRNLTTSLGSVQCVDRPHPYTFAHIIPKTIINDTFAKNCGSIASL 299
           D+LKLR+   +  +  C   P        I   ++NDT  KNC SI SL
Sbjct: 339 DKLKLRSTYVNQLNQCCTFNP--------IFDELVNDTSTKNCSSIGSL 379


>SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 263 YVRKELRIDRFLKLIICTCEFNIVRIYNMHR 355
           Y RK  RI R +  I   CE   V+IYN+ R
Sbjct: 17  YRRKTARIRRKVSEIEKECEMYAVKIYNVER 47


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 171 CVVLSGRFFRFSWWG 127
           CVV +G    FSWWG
Sbjct: 750 CVVYTGGSSNFSWWG 764


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,807
Number of Sequences: 5004
Number of extensions: 40648
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)