Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_H06
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438 33 0.11
05_04_0381 - 20794385-20794612,20794671-20794796 30 0.99
10_08_0161 + 15312986-15313160,15313250-15313557,15313676-153137... 29 1.7
03_06_0599 + 34984869-34985319,34986581-34987563 29 1.7
12_01_0497 + 3946179-3946322,3947274-3947342,3948733-3948829,395... 29 2.3
07_01_0862 - 7172083-7172931 29 3.0
07_01_0450 - 3395644-3395837,3396164-3396190,3396266-3396396,339... 29 3.0
07_03_1028 - 23378140-23378802 28 4.0
09_06_0200 + 21539963-21541271,21541912-21542013,21542095-215422... 27 7.0
09_04_0168 - 15295442-15295477,15295478-15295552,15295660-152957... 27 7.0
07_01_0570 + 4228567-4228852,4229198-4229217 27 7.0
03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593... 27 7.0
>09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438
Length = 617
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = -1
Query: 193 EPSEVVRLRSFKRSLLPLQLVGFPPPLSPSFRELSSLSPPPQRQW 59
+ S VV R+F P G PPP P R +S L PPP QW
Sbjct: 199 QQSTVVASRAFDAHRPPFHSAGLPPP--PR-RSMSLLLPPPPAQW 240
>05_04_0381 - 20794385-20794612,20794671-20794796
Length = 117
Score = 30.3 bits (65), Expect = 0.99
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +3
Query: 72 GGGDREDNSRKEGESGGGNPTS*SGRSDRLK 164
G ED S KEG GG + GR DRLK
Sbjct: 81 GDWAEEDGSAKEGGGGGDEVEAGGGRDDRLK 111
>10_08_0161 +
15312986-15313160,15313250-15313557,15313676-15313754,
15313856-15314373
Length = 359
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 72 GGGDREDNSRKEGESGGGNPTS*SG-RSDRLKLRNLTTSLGSVQCVD 209
GGGD++D +KEG GGG+ G ++D+ K + S+ V D
Sbjct: 244 GGGDKKD--KKEGGGGGGDKKDAGGEKTDKDKSAAASASVAPVPLAD 288
>03_06_0599 + 34984869-34985319,34986581-34987563
Length = 477
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 124 PPPLSPSFRELSSLSPPPQRQW 59
PPP P RE S SPPPQ Q+
Sbjct: 407 PPPPPPHQRETPSPSPPPQPQF 428
>12_01_0497 +
3946179-3946322,3947274-3947342,3948733-3948829,
3951827-3952033,3952149-3952264,3953189-3953293,
3953380-3953552,3953647-3953737,3953869-3954018,
3954482-3954724
Length = 464
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 271 ANVSLIMVFGMICANVYGCGRSTHCTEPSEVVRLRSFKRSLL 146
+NV+L + I A +GC C P ++ +SF LL
Sbjct: 206 SNVNLHVTAKRIAAGKWGCNNGQACISPDFIITTKSFAPKLL 247
>07_01_0862 - 7172083-7172931
Length = 282
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 127 FPPPLSPSFRELSSLSPPPQ 68
+PPPL P + L SPPPQ
Sbjct: 172 YPPPLPPKKKPLPPPSPPPQ 191
>07_01_0450 -
3395644-3395837,3396164-3396190,3396266-3396396,
3396612-3396691,3397283-3397345,3397588-3397697,
3398316-3398424,3398783-3398857,3399363-3399459,
3399622-3399683,3399966-3400026,3400330-3400469,
3400747-3400839,3401345-3401393,3401534-3401634,
3401723-3401816,3401904-3402139
Length = 573
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 196 TEPSEVVRLRSFKRSLLPLQLVGFPPPLSPSFRELSSLSPP 74
T + ++RL +R LLPL + PPP +P S +PP
Sbjct: 3 TAAAALLRLSRSRRPLLPLSSLRLPPP-APYHHHSHSQTPP 42
>07_03_1028 - 23378140-23378802
Length = 220
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 36 RDRSEEEIHCR*GGG--DREDNSRKEGESG 119
R R++EE H R GG RE+ RK+G G
Sbjct: 112 RSRTKEESHARGGGAAPRRENKDRKDGAGG 141
>09_06_0200 +
21539963-21541271,21541912-21542013,21542095-21542291,
21542396-21542603,21542685-21542922,21543010-21543160,
21543538-21543849
Length = 838
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 407 MLLNWSL-FNITGSSRRGL-YLSCSSRLLLIH 496
+LL+W+ FNI RGL YL SRL +IH
Sbjct: 611 LLLDWTTRFNIIKGVARGLLYLHQDSRLTIIH 642
>09_04_0168 -
15295442-15295477,15295478-15295552,15295660-15295722,
15296095-15296319,15296421-15296562,15296678-15296839,
15298148-15298320,15300352-15300882
Length = 468
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 205 THCTEPSEVVRLRSFKRSLLPLQLVGFPPPLSPSF 101
T C PS V R+ K L P Q+ + P+ PSF
Sbjct: 295 TRCYCPSAEVSKRALKAGLQPSQIKVYGLPVRPSF 329
>07_01_0570 + 4228567-4228852,4229198-4229217
Length = 101
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 133 VGFPPPLSPSFRELSSLSPPP 71
+GF PPL P LS PPP
Sbjct: 47 IGFLPPLPPPHYPLSEFLPPP 67
>03_02_0149 +
5933134-5933207,5935039-5935267,5935370-5935468,
5935582-5935616,5935694-5935769,5936552-5936662,
5937001-5937087,5937302-5937395,5937489-5937606,
5938047-5938542,5939263-5939298,5940047-5940578,
5940668-5940792
Length = 703
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 72 GGGDREDNSRKEGESGGGNPTS*SGR 149
G D EDN + GGNPTS SG+
Sbjct: 672 GDDDEEDNIDETNSVLGGNPTSISGQ 697
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,188,212
Number of Sequences: 37544
Number of extensions: 272372
Number of successful extensions: 1101
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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