Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H06
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040657-6|AAB95051.2|  261|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF003139-7|AAB54162.2|  512|Caenorhabditis elegans Defective spe...    27   8.2  

>AF040657-6|AAB95051.2|  261|Caenorhabditis elegans Hypothetical
           protein T20H9.2 protein.
          Length = 261

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 290 DRSAILCERIVNNGFWDDMCKCI-WVWSVDALH 195
           D+  I C++ ++N +WD  C C+  + S D LH
Sbjct: 215 DKFMIKCQKFLSNDWWDGFCFCVKRLSSDDFLH 247


>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 463 IETPPRTPSYIKQRPIQQHSNIL 395
           +E P R PSY++  P++ H  ++
Sbjct: 456 VEEPSRKPSYVECAPVEHHHEVV 478


>AF003139-7|AAB54162.2|  512|Caenorhabditis elegans Defective
           spermatogenesis protein 8 protein.
          Length = 512

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 145 PLQLVGFPPPLSPSFRELSSLSPPP 71
           P+QLV  P PL+P+     +  PPP
Sbjct: 50  PIQLVVQPTPLTPAITPCEAPPPPP 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,363,862
Number of Sequences: 27780
Number of extensions: 234833
Number of successful extensions: 770
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)