Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H05
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   3.4  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    25   5.9  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    25   7.8  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   7.8  

>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 134 LLIYKCFLFLSTNKCYIDVDTIFYVFYTARVILLLLYSIV 253
           +LIY    F S  K +  +  +F+V + + +  L  Y+I+
Sbjct: 308 VLIYLNMKFASKTKGFSKISNVFFVIFLSLITSLTAYAIL 347


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 167 TNKCYIDVDTIFYVF 211
           TN  Y+D DT FY+F
Sbjct: 242 TNPVYLDFDTGFYIF 256


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 282 SDTRSTSAALATLWQQSNTSDSLF 353
           SD +  S+ +   WQ S+T  SLF
Sbjct: 303 SDEQEVSSMMGNRWQHSSTPASLF 326


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 114  LYITLRIYSFINVFYFYLLINVTLMWIQFSMYFIQRV*FYYYCI 245
            +YI L I+SF ++F+++L   V   +I    +F   + F    I
Sbjct: 1970 MYILLSIFSFFSLFWWFLSRVVQARYILSLPFFFFGISFILVAI 2013


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,343,041
Number of Sequences: 5004
Number of extensions: 20856
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)