Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H05
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0208 + 22006032-22006673,22006695-22007078                       27   5.8  
05_03_0464 + 14350391-14350520,14350609-14351342,14351421-143518...    27   7.7  

>03_05_0208 + 22006032-22006673,22006695-22007078
          Length = 341

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 257 HVQLNTIIIKSHALYKIHR 201
           HV LNTI    H+ Y+IHR
Sbjct: 46  HVDLNTIADDVHSAYRIHR 64


>05_03_0464 +
           14350391-14350520,14350609-14351342,14351421-14351882,
           14351964-14352796,14352879-14352948,14352964-14353049,
           14353129-14353429
          Length = 871

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 403 SESDTEIYLYHNRRVYANSESLVLLCCH 320
           +ES TE+  Y NR ++A+ +   ++C H
Sbjct: 742 NESSTEVVDYVNRCLWAHQDKEYIMCAH 769


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,622,320
Number of Sequences: 37544
Number of extensions: 103109
Number of successful extensions: 251
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)