Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H05
         (474 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY028900-1|AAK30025.1| 1543|Homo sapiens ATP-binding cassette A1...    30   4.7  
AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    29   6.2  

>AY028900-1|AAK30025.1| 1543|Homo sapiens ATP-binding cassette A10
           protein.
          Length = 1543

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +2

Query: 128 TYLLIYKCFLFLSTNKCYIDVDTIFYVFYTARVILLLLYSI 250
           ++ L Y CF+F+ +    + + +I  VF+T  +++  LYS+
Sbjct: 179 SWXLTYICFIFIMSIFMALVITSISIVFHTGFMVIFTLYSL 219


>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 114 LYITLRIYSFINVF-YFYLLINVTLMWIQFSMYFIQRV*FYYYCIQLYV 257
           +YI + IY FI ++ Y Y+ I + + +  F+  ++    + Y C+ +Y+
Sbjct: 13  MYIFIFIYIFIYIYIYVYVYIYLYIYFYIFTYIYLYIFIYIYICLYIYL 61


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,488,005
Number of Sequences: 237096
Number of extensions: 656549
Number of successful extensions: 1027
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)