Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_H04
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 28 1.1
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 2.5
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 3.3
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 25 5.8
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 25 5.8
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 25 5.8
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 25 5.8
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 7.7
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S... 25 7.7
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 7.7
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.9 bits (59), Expect = 1.1
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +1
Query: 148 DILCQDISNIDFSTLTSSVAPIIMSIRDNVYQNFPTDANKNTDNDENDQMEKPRSQVKKY 327
D+L QD+S +F +L + + I M +R N+ +NF + N+ + ++E S KK+
Sbjct: 77 DVL-QDLSEDEFVSLYNKLLRIHMGVRKNLEKNFYKNLNEYV--FISGEVESMTSDFKKF 133
Query: 328 R 330
+
Sbjct: 134 Q 134
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 125 TPAATLASELSGNIFIKALLSFVEKARSNFSADFK 21
TP ++ S + NI++ L F+E +S F D+K
Sbjct: 421 TPQGSIVSPILANIYLHQLDEFIENLKSEF--DYK 453
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 427 CIAC-EYYTLRFHYDSVLSHVFSDTHIHNLSCILQS 531
C C E+YT R ++ HV + N+ C++ S
Sbjct: 153 CFDCHEWYTCRHCHNDACDHVLERPAVENMLCMICS 188
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 25.4 bits (53), Expect = 5.8
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 183 FDSHELRSSYYYEYKRQRLSKFSNRCEQKYGQR*KRSDGETEKSSQE 323
F S R + E RQR K+SNR + QR + E ++ E
Sbjct: 252 FSSKRRRFDAFKEMDRQRPGKYSNRGRKFKKQRSSNASEEKPSAASE 298
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 70 NALMKILPDNSEASVAAGVKFYQDVYDIL 156
N ++ PD+ +V AG++FYQ V +IL
Sbjct: 80 NKVVSFDPDSLSITVQAGIRFYQ-VQEIL 107
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 113 TLASELSGNIFIKALLSFVEKARS 42
T A+E++GN+ + + VEKAR+
Sbjct: 88 TYAAEIAGNVSARKRVEIVEKARA 111
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 184 STLTSSVAPIIMSIRDNVYQNFPTDANKNTDND-ENDQMEKPRSQVKKYR 330
+ L +S+ ++S + V N P ++ TDN+ + + +E+ RS +R
Sbjct: 476 NALANSLKNRVLSTYNTVKANVPQSSSSYTDNNKQKEPLEEKRSFFPSFR 525
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +1
Query: 469 SVLSHVFSDTHIHNLSCILQSDKYIPFSMNEP 564
S L S T++H + CI +++ +P++ + P
Sbjct: 629 SQLMTTVSSTNVHYIRCIKPNEEKLPWTFSPP 660
>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
Idi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 227
Score = 25.0 bits (52), Expect = 7.7
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 340 PIETLIVKLLMNHKLLSLIDD-RTGKLAFFCIACEYYTLRFHYDSVLSHVFSDTHIH 507
P E K + +L + D + G +F + CE++ ++ D + F DT IH
Sbjct: 169 PNEVQAYKYVTMEELKEMFSDPQYGFTPWFKLICEHFMFKWWQDVDHASKFQDTLIH 225
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 196 SSVAPIIMSIRDNVYQNFPTDANKNTDN 279
SS+ + S DN NFP+D + T+N
Sbjct: 345 SSLVDFLTSKSDNSSFNFPSDTYEGTEN 372
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,846
Number of Sequences: 5004
Number of extensions: 43373
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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