Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H04
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1286 + 32387687-32387908,32388046-32389494                       29   1.9  
08_02_0648 - 19694538-19696569,19697151-19697998                       29   2.6  
07_03_1343 - 25905475-25905678,25907025-25907167,25907273-259073...    29   2.6  
10_08_0406 - 17688069-17690643,17691065-17691132                       29   3.4  
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617     28   4.5  
12_01_0068 - 580870-581287,581440-582002                               28   5.9  
04_04_0461 + 25390552-25391904                                         27   7.8  

>04_04_1286 + 32387687-32387908,32388046-32389494
          Length = 556

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +1

Query: 178 DFSTLTSSVAPIIMSIRDNVYQNFPTDANKNTDNDENDQMEKPRSQVKKYRYYGP 342
           DF+ L SS  P++  ++D   QN+    + N       +  K  S +   R+Y P
Sbjct: 316 DFTWLNSSYVPVLKQLQDAATQNYYFSGSGNRGTPVKFRNPKYLSMLNHLRFYIP 370


>08_02_0648 - 19694538-19696569,19697151-19697998
          Length = 959

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +1

Query: 199 SVAPIIMSIRDNVYQNFPTDANKNTDNDENDQMEKPRSQV-KKYRYYGPIETLIVKLLMN 375
           S +P I+ I  ++  N     N  T +D+   M++ +  + +K   Y  +  +  + L N
Sbjct: 223 SRSPNIIRILSDILSNI-IKTNNTTSDDQKQLMQRIKEYLNRKSLEYHELVNMTREFLEN 281

Query: 376 HKLLSLIDDRTGKLAFFCIACEY 444
                LIDD   K A+  I C +
Sbjct: 282 KSYFVLIDDVWSKQAWKDIQCAF 304


>07_03_1343 -
           25905475-25905678,25907025-25907167,25907273-25907366,
           25907526-25907687,25907884-25907952,25908631-25908843,
           25909054-25909113,25909294-25909382,25909745-25910063
          Length = 450

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 22/74 (29%), Positives = 29/74 (39%)
 Frame = +1

Query: 319 KKYRYYGPIETLIVKLLMNHKLLSLIDDRTGKLAFFCIACEYYTLRFHYDSVLSHVFSDT 498
           KK + YG     + KL ++HK L    D    L  F + CE      H     S      
Sbjct: 254 KKNKVYGQNLCYLAKLFLDHKTLYYDVD----LFLFYVLCECDDRGCHMVGYFSKEKHSE 309

Query: 499 HIHNLSCILQSDKY 540
             +NL+CIL    Y
Sbjct: 310 ESYNLACILTLPPY 323


>10_08_0406 - 17688069-17690643,17691065-17691132
          Length = 880

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +1

Query: 163 DISNIDFSTLTSS----VAPIIMSIRDNVYQNFPTDANKNTDNDENDQMEK 303
           DI  +DF T+T++       +   + DN + + P  A    D+D+  Q +K
Sbjct: 658 DIDGLDFRTMTTTEIILACHLATELLDNEHDDHPPPAADENDDDQQQQKKK 708


>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
          Length = 988

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +1

Query: 352 LIVKLLMNHKLLSLIDDRTGKLAFFCIACEYYTLRFHYDSVLSHVFSDTHIHNL--SCIL 525
           +I + L N++   +IDD   K A+  I C      F Y+S  S + + T I ++  SC  
Sbjct: 276 MIKEYLKNNRYFIVIDDIWSKSAWQVIQC-----AFPYNSNASRIMTTTRIQDVAQSCCF 330

Query: 526 QSDKYI 543
             + YI
Sbjct: 331 THEDYI 336


>12_01_0068 - 580870-581287,581440-582002
          Length = 326

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +1

Query: 82  KILPDNSEASVAAGVKFYQDVYDILCQDISNIDFSTLTSSVAPIIMSIRDNV 237
           ++L       +   V  +QD +D      +N D S++   V PI+M+++ N+
Sbjct: 136 EVLEKMRREQLVESVSGFQDYFDTAPSTGTNDDASSVDHCVGPILMALQSNL 187


>04_04_0461 + 25390552-25391904
          Length = 450

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 171 RDILAQNIVNILIEFHTCCNTSF*IIW 91
           RD LA N + +L++   CC   F IIW
Sbjct: 316 RDWLAWNQIFLLVDVICCCAVFFPIIW 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,293,946
Number of Sequences: 37544
Number of extensions: 225607
Number of successful extensions: 651
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)