Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H04
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   3.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   4.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.6  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +1

Query: 193 TSSVAPIIMSIRDNV----YQNFPTDANKNTDNDENDQMEK 303
           TS    II S+ +N     Y N+  + N N +N+ N+  +K
Sbjct: 75  TSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKK 115


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +1

Query: 193 TSSVAPIIMSIRDNV----YQNFPTDANKNTDNDENDQMEK 303
           TS    II S+ +N     Y N+  + N N +N+ N+  +K
Sbjct: 75  TSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKK 115


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +1

Query: 475 LSHVFSDTHIHNLSCILQSDKYIPFSMNE 561
           +SH   + H+  L  + + D ++P  + E
Sbjct: 95  VSHTCIENHLKQLGYVQKLDTWVPHELKE 123


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 473 SLVMSLVTPTYTTSLVSSNLINISH 547
           +L+   + P Y  S+V  +L+N SH
Sbjct: 450 ALLSYFIEPIYFHSIVLGSLLNPSH 474


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 431 SLANITL*GSIMTVSLVMSLVTPTYTTSLVSSNLINISH 547
           S   +TL   +MT++L+   + P+ T  ++ +NL  I H
Sbjct: 247 STTYVTLTIVLMTMTLMTLWLEPSSTERMIIANLNFILH 285


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 229 DNVYQNFPTDANKNTDNDEND 291
           DN  +N   +AN   +N++ND
Sbjct: 431 DNNQKNNKKNANNQKNNNQND 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,904
Number of Sequences: 438
Number of extensions: 3232
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)