Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H03
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...    84   9e-18
SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    83   2e-17
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   2.6  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   4.5  
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    25   6.0  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   7.9  

>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 84.2 bits (199), Expect = 9e-18
 Identities = 36/50 (72%), Positives = 43/50 (86%)
 Frame = -1

Query: 192 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 43
           RKSE+EYYA+L+K  VHHY+G NI+LGTACGK +RV  LAITD GDSDI+
Sbjct: 58  RKSELEYYAMLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107


>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 83.4 bits (197), Expect = 2e-17
 Identities = 35/50 (70%), Positives = 43/50 (86%)
 Frame = -1

Query: 192 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 43
           RKSE+EYYA+L++  VHHYSGNNI+LGTACGK +RV  LA+ D GDSDI+
Sbjct: 66  RKSELEYYAMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1158

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 328  KGFLKLFYSEAIKNIMYN-WKS*FYWIINIVGETYGVVLC 212
            +G   L YS+    +  N WKS   W+IN  G+  G  LC
Sbjct: 1040 RGEFLLCYSDFAFFVNTNGWKSRQSWMINWEGQPQGCALC 1079


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +2

Query: 140 WWTPVLARRA*YSISDFLPKISKWT*DYSIGFPDNVYNP 256
           WWTPV   +     + +   I +    +   + DNVY P
Sbjct: 576 WWTPVYVNQELRCKNAYCDSIQRKGIKFPANYFDNVYTP 614


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 7/33 (21%), Positives = 20/33 (60%)
 Frame = -3

Query: 370 YNINFHLKII*NSKKGFLKLFYSEAIKNIMYNW 272
           +N++F L+++ + ++  +K  +   +KN  + W
Sbjct: 347 HNVHFQLQLMRDMRESIIKDEFPSFVKNFFHEW 379


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 397 IIQ*KKHSTYNINFHLKII*NSKKGFLKLFYS 302
           II+ KK    NI      I +   GF+KLFY+
Sbjct: 135 IIKEKKEKYVNIEKEALCILSKHPGFIKLFYT 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,986
Number of Sequences: 5004
Number of extensions: 41882
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)