Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H03
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical ...   105   2e-23
Z70203-5|CAA94108.3|  429|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AF016655-4|AAY55854.1|  144|Caenorhabditis elegans Hypothetical ...    28   4.1  
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    27   7.1  
Z82077-2|CAB04940.1|  722|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical
           protein Y106G6H.3 protein.
          Length = 113

 Score =  105 bits (251), Expect = 2e-23
 Identities = 45/58 (77%), Positives = 53/58 (91%)
 Frame = -1

Query: 192 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEATA 19
           RKSEIEYYA+LAKTGVHHY+GNNIELGTACG+ +RVCTLA+TD GDSDII ++P  +A
Sbjct: 56  RKSEIEYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVTDAGDSDIILSVPSESA 113


>Z70203-5|CAA94108.3|  429|Caenorhabditis elegans Hypothetical
           protein C05G5.5 protein.
          Length = 429

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 238 GETYGVVLCPFANLWQEVGDRI 173
           G  +G +  PF  +W+EV DR+
Sbjct: 59  GYLFGTIHVPFTEVWKEVSDRV 80


>AF016655-4|AAY55854.1|  144|Caenorhabditis elegans Hypothetical
           protein C17F4.11 protein.
          Length = 144

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -1

Query: 213 VHLLIFGRKSEIEY-YALLAKT-GVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIIT 40
           + +++  RK  + + Y +  KT GV HY GN  +L +   K+ R   +   +   +D + 
Sbjct: 25  LQIIVNARKPVLVFGYPVSNKTKGVVHYEGNEFDLRSFLKKFNRQMEIFFKESESNDWLF 84

Query: 39  TLPEA 25
           TL  A
Sbjct: 85  TLYNA 89


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 174 YYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSD 49
           +Y LLA  G+     + +ELGTA   YY +    +T  G  D
Sbjct: 252 FYCLLA--GLSREEKSELELGTAADYYYLIQGKTLTAEGRDD 291


>Z82077-2|CAB04940.1|  722|Caenorhabditis elegans Hypothetical
           protein W09C5.5 protein.
          Length = 722

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/54 (20%), Positives = 27/54 (50%)
 Frame = -1

Query: 234 KPME*SYVHLLIFGRKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLA 73
           K +E   +H ++   +  +++Y ++    +H Y+  +  +G    + YR+  LA
Sbjct: 279 KKLEGWMMHFILSDPERRLKHYWMMQSNAIHLYNEYSEGIGVNPNRVYRIIPLA 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,223,687
Number of Sequences: 27780
Number of extensions: 231535
Number of successful extensions: 435
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)