Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H02
         (373 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-12|CAA92673.1|  345|Caenorhabditis elegans Hypothetical p...    28   1.9  
AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    27   5.7  
Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical pr...    26   9.9  
U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short for...    26   9.9  
U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form...    26   9.9  
U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical pr...    26   9.9  

>Z68315-12|CAA92673.1|  345|Caenorhabditis elegans Hypothetical
           protein F28C6.9 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 103 KHNTRIFSKFTLKLSGLYSYEGQGSKKKKKTRL 5
           +HN+R  SK  +K+   +SYEG G   K++T L
Sbjct: 206 EHNSRPSSKRNVKVER-HSYEGDGMSMKEETNL 237


>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = -2

Query: 186 HQRIAPVSLHLHS-PPLVQPCKLPPCIIPNTIHAFSQNLL*SYPDCTLT 43
           ++ + P S H  + PP VQ    PPC    T    +     + P C  T
Sbjct: 186 YRTVPPASNHYETVPPAVQTTPQPPCTPRTTTTTTTTTTTTTLPPCVYT 234


>Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical
           protein F15C11.1 protein.
          Length = 744

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 201 LSQ*QHQRIAPVSLHLHSPP 142
           + Q QHQ   P  +H+H+PP
Sbjct: 375 MHQHQHQIAPPQRIHIHNPP 394


>U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short form
           protein.
          Length = 715

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 201 LSQ*QHQRIAPVSLHLHSPP 142
           + Q QHQ   P  +H+H+PP
Sbjct: 346 MHQHQHQIAPPQRIHIHNPP 365


>U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form
           protein.
          Length = 744

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 201 LSQ*QHQRIAPVSLHLHSPP 142
           + Q QHQ   P  +H+H+PP
Sbjct: 375 MHQHQHQIAPPQRIHIHNPP 394


>U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical
           protein F18C5.4 protein.
          Length = 308

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 135 QPCKLPPCIIPNT 97
           +PCK PPCII  T
Sbjct: 256 KPCKNPPCIIKTT 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,096,076
Number of Sequences: 27780
Number of extensions: 115902
Number of successful extensions: 278
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)