Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_H01
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 181 3e-46
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 180 1e-45
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 157 6e-39
09_02_0235 + 6122145-6122206,6122408-6122417,6123515-6123549,612... 31 0.53
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 28 5.0
11_06_0007 - 19171122-19172036 28 6.6
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864... 28 6.6
04_01_0014 - 231228-233179,233522-233714 27 8.7
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 181 bits (441), Expect = 3e-46
Identities = 83/170 (48%), Positives = 116/170 (68%), Gaps = 3/170 (1%)
Frame = +2
Query: 32 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 211
+Y+V+GR LP+ ++ P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+I++I EI
Sbjct: 8 QYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIF 67
Query: 212 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 391
EK+P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 68 EKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 392 VEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPSTY 532
+ C+R KQFH S I FPL R K TF RP+ +
Sbjct: 128 TATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 180 bits (437), Expect = 1e-45
Identities = 81/170 (47%), Positives = 115/170 (67%), Gaps = 3/170 (1%)
Frame = +2
Query: 32 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 211
+Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G++++I EI
Sbjct: 8 QYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
Query: 212 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 391
E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 68 ERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 392 VEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPSTY 532
+ C+R KQFH S I FPL R K TF RP+ +
Sbjct: 128 TATVHFKLCKRDNTKQFHNSNIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 157 bits (381), Expect = 6e-39
Identities = 80/187 (42%), Positives = 114/187 (60%), Gaps = 20/187 (10%)
Frame = +2
Query: 32 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRF----------W-------YFLRQL 160
+Y+V+GR LP+ + P +Y+M++++ + + AKS+F W YFLR+L
Sbjct: 8 QYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFLRKL 67
Query: 161 KKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYR 340
KK KK+ G++++I EI E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y
Sbjct: 68 KKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYT 127
Query: 341 DMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFA 511
+M +RHR R IQIIK + C+R KQFH I FPL R K TF
Sbjct: 128 EMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYRKVRPPTRKLKTTFK 187
Query: 512 YKRPSTY 532
RP+ +
Sbjct: 188 ASRPNLF 194
>09_02_0235 +
6122145-6122206,6122408-6122417,6123515-6123549,
6124422-6124842,6124978-6125412
Length = 320
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = -2
Query: 307 QVTVFTVHIVDTRARLVTQPDTKVLNLNRTLFWNFLDGYNFTSSLFELLQLPQEIPE 137
+++ F V I +L+ P+T VLNL + +F+ T+ L E L +P+ I E
Sbjct: 185 EISDFDVLIGHPIEKLIDVPETGVLNLKIEIIISFVPVLQSTNCLMEPLPIPEPIKE 241
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = +2
Query: 134 RFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSV 313
++W + TGE+ S+K I +K +++ +G ++ + S +G + + Y +
Sbjct: 103 QYWMDENYISACFAPTGELQSVKLIRDKQTGQLQGYG-FIEFTSHAGAERVLQTYNGAMM 161
Query: 314 GGAVTQCYR 340
V Q YR
Sbjct: 162 PN-VEQTYR 169
>11_06_0007 - 19171122-19172036
Length = 304
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = -3
Query: 444 WNCLTCGRRHAAALITST--LMICIECARALCLAPISL 337
W C CG R AA L+ L +C C P+ L
Sbjct: 252 WGCKACGEREAAVLLLPCRHLCLCRACEARAEACPVCL 289
>01_06_0801 -
32085110-32085274,32086318-32086365,32086441-32086483,
32086588-32086651,32086740-32086792,32086899-32086937,
32087031-32087113,32087200-32087280
Length = 191
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 486 W*TRFGSGKPILLVWNCLTCGRRHAAALITSTLMICIECARAL 358
W R+G KPI+ C CG+R+ + +C C++ L
Sbjct: 52 WKRRYGKYKPIVEPAKCQKCGKRNVRQAYHN---VCTACSKDL 91
>04_01_0014 - 231228-233179,233522-233714
Length = 714
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -3
Query: 147 KYQKRDFATIGSGEKILILYRGGFGSLSEGSLRPMT 40
+Y D AT EK L GGFGS+ +G LR +T
Sbjct: 407 RYSDLDHATKNFSEK---LGEGGFGSVFKGVLRDLT 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,807,247
Number of Sequences: 37544
Number of extensions: 332004
Number of successful extensions: 940
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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