Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G24
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   168   3e-43
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    29   0.30 
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   0.52 
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   1.2  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   6.4  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   6.4  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   6.4  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    24   8.5  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    24   8.5  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  168 bits (409), Expect = 3e-43
 Identities = 78/101 (77%), Positives = 92/101 (91%)
 Frame = +2

Query: 122 EKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRK 301
           +K Q   S +HRIRITLTSRNVR+LEKVCSDL+N AK ++LRVKGPVR+PTK+L+ITTRK
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67

Query: 302 TPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEP 424
           TP GEGSKTW+ ++MRIHKR+IDLHSPSEIVKQITSI+IEP
Sbjct: 68  TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEP 108


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 29.1 bits (62), Expect = 0.30
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +2

Query: 239 KLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 391
           K+ +KGP  +P KV   T  ++P    S + + F+   H R+I L+S + +
Sbjct: 92  KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 28.3 bits (60), Expect = 0.52
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 104  VSGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVK 253
            +S   IEKP+A  SPIH       +  +R L+ V      GA++ +  VK
Sbjct: 891  LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 95  AAVVSGKDIEKPQAEISPIHRIRITLTSRNVRS 193
           A V +  D+EKPQ +++   R+   L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 304 CFTCCDAENLGRHSDWTLYTEF 239
           C+ C  A+NL  HS  +L+  F
Sbjct: 469 CYLCLYAQNLNSHSSQSLFELF 490


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 355 VDAHLESVPSLGTLTARCFTCCDAENLG 272
           + A L+++ SLG       TC  AEN G
Sbjct: 52  IQADLKTMTSLGVYGMSAITCLVAENAG 79


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 296 RKTPCGEGSKTWDRFQM 346
           R +P   GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 54  KVVYLDRNIATTWQPLSCQERISRSPRLRSH 146
           K +Y D   ++   P   Q R+ ++P +R+H
Sbjct: 322 KNLYTDNKDSSLVSPTGLQSRMEQNPEVRAH 352


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -2

Query: 318 PSPQGVLRVVMRRTLVGIRTGPFTR 244
           P PQ ++ +     L G+   PF R
Sbjct: 176 PQPQAIMHLETSSNLTGVTVNPFNR 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,564
Number of Sequences: 5004
Number of extensions: 36229
Number of successful extensions: 88
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)