Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G24
         (424 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           24   2.0  
AJ697726-1|CAG26919.1|  198|Anopheles gambiae putative odorant-b...    24   2.0  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   2.6  
CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    22   8.0  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 140  SQPGASRYPFLTRQRLPCCCDIPVEIN 60
            S PG S+ P L R+  P  C +  +I+
Sbjct: 1147 SGPGGSKTPILNRKEKPKSCSVCRQIS 1173


>AJ697726-1|CAG26919.1|  198|Anopheles gambiae putative
           odorant-binding protein OBPjj16 protein.
          Length = 198

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 86  CCDIPVEINNFQIKNCSALNRSTALFP 6
           CC IP  I+N  ++ C A N      P
Sbjct: 37  CCKIPKPIDNAIMEKCRAENPKPGQMP 63


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 68  RPEYRNNMAAAVVSGKDIEKPQAEISPIHRIRITLTSRNVRSLEK 202
           R E  N    A    KD+EKP+ E     +   TLT    + ++K
Sbjct: 269 RTEKHNRCKLAEREMKDLEKPKTEAVEYLKQENTLTRTRNQQIQK 313


>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 98  RLPCCCDIPVEINNFQIKNCS 36
           R P C ++ VE+ NF   +C+
Sbjct: 293 RCPACGNLFVELTNFYNHSCT 313


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 468,575
Number of Sequences: 2352
Number of extensions: 9729
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 35060166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)