Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_G24
(424 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20 pro... 178 7e-45
BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20 p... 178 7e-45
BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20 p... 178 7e-45
AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20 p... 178 7e-45
AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20 p... 122 5e-28
M16276-1|AAA59823.1| 269|Homo sapiens HLA-DRB2 protein. 29 6.5
AY663414-1|AAU88032.1| 261|Homo sapiens MHC class II antigen pr... 29 6.5
AY375869-1|AAQ88043.1| 234|Homo sapiens MHC class II antigen pr... 29 6.5
AY375868-1|AAQ88042.1| 234|Homo sapiens MHC class II antigen pr... 29 6.5
AF000447-1|AAB86436.1| 255|Homo sapiens MHC class II HLA-DQB1 p... 29 6.5
M60052-1|AAA88071.1| 699|Homo sapiens histidine-rich calcium bi... 29 8.5
BC112355-1|AAI12356.1| 699|Homo sapiens histidine-rich calcium-... 29 8.5
BC094691-1|AAH94691.1| 699|Homo sapiens histidine rich calcium ... 29 8.5
BC069802-1|AAH69802.1| 699|Homo sapiens histidine rich calcium ... 29 8.5
BC069795-1|AAH69795.1| 699|Homo sapiens histidine rich calcium ... 29 8.5
AK129876-1|BAC85246.1| 480|Homo sapiens protein ( Homo sapiens ... 29 8.5
>L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 178 bits (433), Expect = 7e-45
Identities = 86/105 (81%), Positives = 93/105 (88%), Gaps = 1/105 (0%)
Frame = +2
Query: 113 KDIEKPQAEIS-PIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI 289
KD K E IHRIRITLTSRNV+SLEKVC+DLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 290 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEP 424
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEP
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEP 108
>BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 178 bits (433), Expect = 7e-45
Identities = 86/105 (81%), Positives = 93/105 (88%), Gaps = 1/105 (0%)
Frame = +2
Query: 113 KDIEKPQAEIS-PIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI 289
KD K E IHRIRITLTSRNV+SLEKVC+DLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 290 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEP 424
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEP
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEP 108
>BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 178 bits (433), Expect = 7e-45
Identities = 86/105 (81%), Positives = 93/105 (88%), Gaps = 1/105 (0%)
Frame = +2
Query: 113 KDIEKPQAEIS-PIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI 289
KD K E IHRIRITLTSRNV+SLEKVC+DLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 290 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEP 424
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEP
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEP 108
>AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 178 bits (433), Expect = 7e-45
Identities = 86/105 (81%), Positives = 93/105 (88%), Gaps = 1/105 (0%)
Frame = +2
Query: 113 KDIEKPQAEIS-PIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI 289
KD K E IHRIRITLTSRNV+SLEKVC+DLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 290 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEP 424
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEP
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEP 108
>AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20
protein.
Length = 60
Score = 122 bits (294), Expect = 5e-28
Identities = 55/58 (94%), Positives = 57/58 (98%)
Frame = +2
Query: 251 KGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEP 424
KGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEP
Sbjct: 1 KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEP 58
>M16276-1|AAA59823.1| 269|Homo sapiens HLA-DRB2 protein.
Length = 269
Score = 29.1 bits (62), Expect = 6.5
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 233 KQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 406
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY663414-1|AAU88032.1| 261|Homo sapiens MHC class II antigen
protein.
Length = 261
Score = 29.1 bits (62), Expect = 6.5
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 233 KQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 406
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY375869-1|AAQ88043.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 29.1 bits (62), Expect = 6.5
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 233 KQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 406
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY375868-1|AAQ88042.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 29.1 bits (62), Expect = 6.5
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 233 KQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 406
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AF000447-1|AAB86436.1| 255|Homo sapiens MHC class II HLA-DQB1
protein.
Length = 255
Score = 29.1 bits (62), Expect = 6.5
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 233 KQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 406
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 1 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 57
>M60052-1|AAA88071.1| 699|Homo sapiens histidine-rich calcium
binding protein protein.
Length = 699
Score = 28.7 bits (61), Expect = 8.5
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 304 CFTC-CDAENLGRHSDWTLYTEFLFL 230
C +C CD EN+G H D + +F +L
Sbjct: 639 CESCHCDEENMGEHCDQCQHCQFCYL 664
>BC112355-1|AAI12356.1| 699|Homo sapiens histidine-rich
calcium-binding protein, precursor protein.
Length = 699
Score = 28.7 bits (61), Expect = 8.5
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 304 CFTC-CDAENLGRHSDWTLYTEFLFL 230
C +C CD EN+G H D + +F +L
Sbjct: 639 CESCHCDEENMGEHCDQCQHCQFCYL 664
>BC094691-1|AAH94691.1| 699|Homo sapiens histidine rich calcium
binding protein protein.
Length = 699
Score = 28.7 bits (61), Expect = 8.5
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 304 CFTC-CDAENLGRHSDWTLYTEFLFL 230
C +C CD EN+G H D + +F +L
Sbjct: 639 CESCHCDEENMGEHCDQCQHCQFCYL 664
>BC069802-1|AAH69802.1| 699|Homo sapiens histidine rich calcium
binding protein protein.
Length = 699
Score = 28.7 bits (61), Expect = 8.5
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 304 CFTC-CDAENLGRHSDWTLYTEFLFL 230
C +C CD EN+G H D + +F +L
Sbjct: 639 CESCHCDEENMGEHCDQCQHCQFCYL 664
>BC069795-1|AAH69795.1| 699|Homo sapiens histidine rich calcium
binding protein protein.
Length = 699
Score = 28.7 bits (61), Expect = 8.5
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 304 CFTC-CDAENLGRHSDWTLYTEFLFL 230
C +C CD EN+G H D + +F +L
Sbjct: 639 CESCHCDEENMGEHCDQCQHCQFCYL 664
>AK129876-1|BAC85246.1| 480|Homo sapiens protein ( Homo sapiens
cDNA FLJ26366 fis, clone HRT05814. ).
Length = 480
Score = 28.7 bits (61), Expect = 8.5
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 304 CFTC-CDAENLGRHSDWTLYTEFLFL 230
C +C CD EN+G H D + +F +L
Sbjct: 420 CESCHCDEENMGEHCDQCQHCQFCYL 445
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,159,461
Number of Sequences: 237096
Number of extensions: 1452829
Number of successful extensions: 3692
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3691
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3259265358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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