Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_G23
(308 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 62 2e-11
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe... 26 1.5
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 25 3.4
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 3.4
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 24 5.9
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 24 5.9
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 24 5.9
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 23 7.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 23 7.9
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 23 7.9
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 23 7.9
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 61.7 bits (143), Expect = 2e-11
Identities = 25/37 (67%), Positives = 32/37 (86%)
Frame = +2
Query: 197 RNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRR 307
R+F IGQDIQP RDLSRFV+WP+YIR+QR++ +L R
Sbjct: 32 RSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLR 68
>SPAC869.06c |||cation binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 1.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 187 KRTKKLCYWPGHPANQRSIPFRAMAEIYSHPASK 288
+RTKK HP+ PF +A +++ P K
Sbjct: 161 ERTKKFVPTHSHPSAPNKPPFETVAGLFAAPIDK 194
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 24.6 bits (51), Expect = 3.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 162 EDCKPSIQEENKETLLL 212
E+ PS++EE KE LLL
Sbjct: 171 ENANPSVREEAKEVLLL 187
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 3.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 297 NTAF*RWMRIYFGHRTKRDRSLVGWMSWPIAKF 199
N F R +R+YF + DRSL + W ++
Sbjct: 171 NANFLRQLRVYFECNYQLDRSLRPYRQWLFRRY 203
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 23.8 bits (49), Expect = 5.9
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -3
Query: 171 YNLLGLNFLHHKW 133
YN GL++L H+W
Sbjct: 881 YNAAGLSYLRHEW 893
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 23.8 bits (49), Expect = 5.9
Identities = 14/60 (23%), Positives = 22/60 (36%)
Frame = +3
Query: 57 ITELKSIQDGXXXXXXXDREKSSGRSTCGEES*AQEDCKPSIQEENKETLLLARTSSQPE 236
+ K G R + S+ + A + KPS ++TLL S +PE
Sbjct: 1224 VNRTKKKPRGKSTGTRKPRAIAGSSSSTAVKKEASSESKPSTTNRKQQTLLEFAASKEPE 1283
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 23.8 bits (49), Expect = 5.9
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +2
Query: 11 SFGVRNRSRIYSWPLD 58
SF + N+ R+Y+W L+
Sbjct: 291 SFAIDNKGRVYAWGLN 306
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 23.4 bits (48), Expect = 7.9
Identities = 8/31 (25%), Positives = 14/31 (45%)
Frame = -3
Query: 162 LGLNFLHHKWSGRYFFPYXXXXXXXXXLEWI 70
LGL +L +W +YF + +W+
Sbjct: 179 LGLAYLIFRWLPKYFIRFVGTREPLATADWL 209
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 23.4 bits (48), Expect = 7.9
Identities = 10/47 (21%), Positives = 21/47 (44%)
Frame = +3
Query: 60 TELKSIQDGXXXXXXXDREKSSGRSTCGEES*AQEDCKPSIQEENKE 200
++L S +D DR++ ++ ++ +P IQE N +
Sbjct: 4029 SDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQ 4075
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 23.4 bits (48), Expect = 7.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 238 ISGWLDVLANSKVSLFSS*IEGLQSS 161
I WL+VL + ++ FSS +E L S
Sbjct: 671 IDNWLNVLPLTAITTFSSMLERLDFS 696
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 23.4 bits (48), Expect = 7.9
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +1
Query: 202 LCYWPGHPANQRSIPFRAMAEIY 270
L YW HP S PF E++
Sbjct: 304 LSYWQVHPFTLASAPFDDFIELF 326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,129,207
Number of Sequences: 5004
Number of extensions: 17981
Number of successful extensions: 47
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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