Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_G23
(308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 52 1e-07
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 50 3e-07
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 50 3e-07
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 29 0.56
10_02_0137 - 5730778-5730873,5732137-5732334,5732413-5732625,573... 27 3.0
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569... 27 4.0
06_03_0606 - 22689935-22689998,22690716-22691159,22691669-226920... 26 6.9
02_03_0077 + 14874273-14874571,14875304-14876150,14876878-148771... 26 6.9
01_05_0233 - 19641309-19641871,19650741-19650892,19651193-19651308 26 6.9
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 51.6 bits (118), Expect = 1e-07
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +2
Query: 176 LYSRREQRNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRR 307
L+ +R ++ F IG + P +DL RFVRWPK +RIQRQ+ VL++R
Sbjct: 25 LFEKRPKQ-FGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQR 67
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 50.4 bits (115), Expect = 3e-07
Identities = 21/44 (47%), Positives = 33/44 (75%)
Frame = +2
Query: 176 LYSRREQRNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRR 307
L+ +R ++ F IG + P +DL RFV+WPK +RIQRQ+ +L++R
Sbjct: 24 LFEKRPKQ-FGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQR 66
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 50.4 bits (115), Expect = 3e-07
Identities = 21/44 (47%), Positives = 33/44 (75%)
Frame = +2
Query: 176 LYSRREQRNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRR 307
L+ +R ++ F IG + P +DL RFV+WPK +RIQRQ+ +L++R
Sbjct: 8 LFEKRPKQ-FGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQR 50
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 29.5 bits (63), Expect = 0.56
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = +2
Query: 149 KLSPR--RL*TLYSRREQRNFAIGQDIQP-TRDLSRFVRWPKY 268
KL PR RL TLY +RE + FA + IQ ++ S+FV +P Y
Sbjct: 521 KLLPRGTRL-TLYLKREDKGFAHPEKIQKLVKNYSQFVSFPIY 562
>10_02_0137 -
5730778-5730873,5732137-5732334,5732413-5732625,
5732748-5732870,5733726-5733841,5734530-5734897,
5735498-5735649,5736557-5736715,5737773-5737946
Length = 532
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +3
Query: 78 QDGXXXXXXXDREKSSGRSTCGEES*AQEDCKPSIQEENKETLLLARTSSQPEIYPV 248
++G + +K G++ ES A ED + QE+ +L + QP+ PV
Sbjct: 330 EEGGLSKSGKELKKLLGKAAGLNESDADEDDEDDDQEDESSPVLAPKQKDQPKDEPV 386
>03_02_0112 +
5689439-5689474,5689629-5689778,5690194-5690361,
5691334-5691458,5691914-5692007,5692844-5692942,
5693730-5693910,5694051-5694166,5694758-5694913,
5695226-5695354,5695554-5695718
Length = 472
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 289 LLTLDANIFRPSHETG*ISGWL 224
LLT + N RPSH + GW+
Sbjct: 102 LLTKNPNFVRPSHRLNEVQGWV 123
>06_03_0606 - 22689935-22689998,22690716-22691159,22691669-22692057,
22692130-22692223,22692507-22692599,22692705-22692913,
22692999-22693833,22693948-22694038,22698069-22698892,
22699384-22700489,22701353-22701415
Length = 1403
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 188 REQRNFAIGQDIQPTRDLSRFVRWPKYIRIQRQK 289
R R F QD P D+S V PKY R++ +K
Sbjct: 1019 RVMRQFGKKQD-WPVEDISTGVELPKYDRVRTKK 1051
>02_03_0077 +
14874273-14874571,14875304-14876150,14876878-14877147,
14877313-14878065
Length = 722
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -1
Query: 308 DDAVTQPFDAGCEYISAIARNGIDLWL 228
D+++ + ++ EY++A R+G+D WL
Sbjct: 19 DESIPEVWERLQEYVAACPRHGMDDWL 45
>01_05_0233 - 19641309-19641871,19650741-19650892,19651193-19651308
Length = 276
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -1
Query: 308 DDAVTQPFDAGCEYISAIARNGIDLWL 228
D+ + + ++ EY++A NG+D WL
Sbjct: 164 DETIPKAWERLQEYVAACPHNGMDNWL 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,238,242
Number of Sequences: 37544
Number of extensions: 113628
Number of successful extensions: 335
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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