Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G23
         (308 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    68   1e-12
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    68   1e-12
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    68   1e-12
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    68   1e-12
Z49910-3|CAA90121.1|  179|Caenorhabditis elegans Hypothetical pr...    26   6.2  
AC024813-5|AAK27883.1|  255|Caenorhabditis elegans Hypothetical ...    25   8.1  
AC024813-4|AAK27882.1|  297|Caenorhabditis elegans Hypothetical ...    25   8.1  

>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 29/44 (65%), Positives = 38/44 (86%)
 Frame = +2

Query: 176 LYSRREQRNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRR 307
           L+ +R  RNF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+R
Sbjct: 135 LFEKRA-RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKR 177


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 29/44 (65%), Positives = 38/44 (86%)
 Frame = +2

Query: 176 LYSRREQRNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRR 307
           L+ +R  RNF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+R
Sbjct: 135 LFEKRA-RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKR 177


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 29/44 (65%), Positives = 38/44 (86%)
 Frame = +2

Query: 176 LYSRREQRNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRR 307
           L+ +R  RNF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+R
Sbjct: 32  LFEKRA-RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKR 74


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 29/44 (65%), Positives = 38/44 (86%)
 Frame = +2

Query: 176 LYSRREQRNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRR 307
           L+ +R  RNF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+R
Sbjct: 32  LFEKRA-RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKR 74


>Z49910-3|CAA90121.1|  179|Caenorhabditis elegans Hypothetical
           protein F44G4.5 protein.
          Length = 179

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
 Frame = +3

Query: 60  TELKSIQDGXXXXXXXDREKSSGRS--TCGEES*AQEDCKPSIQEENKETLLLARTSSQP 233
           T + +IQ           EKSS     T  E     EDC    +    + +    T + P
Sbjct: 17  TSMDNIQRNLMLLEIEKNEKSSFDDVITGAESDNGWEDCLRETESVQSQWITEQSTIAYP 76

Query: 234 EIYPVSCDG 260
           E   V+CDG
Sbjct: 77  ETTRVNCDG 85


>AC024813-5|AAK27883.1|  255|Caenorhabditis elegans Hypothetical
           protein Y54F10AL.1b protein.
          Length = 255

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 231 VGWMSWPIAKFLCSLLE*RVYNLLGLNFLHHKWS 130
           +GW++  I + +   L   ++ L GL  LH  W+
Sbjct: 119 LGWITQVIPRAVTYYLSTALFALFGLKMLHEGWT 152


>AC024813-4|AAK27882.1|  297|Caenorhabditis elegans Hypothetical
           protein Y54F10AL.1a protein.
          Length = 297

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 231 VGWMSWPIAKFLCSLLE*RVYNLLGLNFLHHKWS 130
           +GW++  I + +   L   ++ L GL  LH  W+
Sbjct: 119 LGWITQVIPRAVTYYLSTALFALFGLKMLHEGWT 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,157,780
Number of Sequences: 27780
Number of extensions: 97709
Number of successful extensions: 209
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)