Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G23
         (308 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.48 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.48 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   4.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   7.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   7.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   7.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 0.48
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 196 KKLCYWPGHPANQR-SIPFRAMAEIYSHPASK 288
           +K CY+P HP+ Q  S         +S  ASK
Sbjct: 385 EKTCYYPYHPSTQEDSEEHLTPKRFHSRAASK 416


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 0.48
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 196 KKLCYWPGHPANQR-SIPFRAMAEIYSHPASK 288
           +K CY+P HP+ Q  S         +S  ASK
Sbjct: 385 EKTCYYPYHPSTQEDSEEHLTPKRFHSRAASK 416


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -1

Query: 242 IDLWLAGC 219
           +D+W+AGC
Sbjct: 262 LDVWMAGC 269


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 177 RVYNLLGLNFLHHKWSG 127
           R++NL+ +  L   WSG
Sbjct: 278 RIFNLICMMLLIGHWSG 294


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 177 RVYNLLGLNFLHHKWSG 127
           R++NL+ +  L   WSG
Sbjct: 246 RIFNLICMMLLIGHWSG 262


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 208  YWPGHPANQRSIPFRAMAEIYSHPASK 288
            Y P  PAN +    +A A+  S  A+K
Sbjct: 997  YTPPQPANAQQGQAQAQAKPQSQEANK 1023


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,493
Number of Sequences: 438
Number of extensions: 1314
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)