Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G21
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    27   0.81 
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    27   1.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   3.3  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    25   5.7  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   5.7  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   5.7  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    24   7.6  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    24   7.6  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    24   10.0 

>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 27.5 bits (58), Expect = 0.81
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -1

Query: 189 IQIHYYYSDKIPNPNSN*KLLTSNRKLNHHTQKNIIF 79
           ++  Y++ +  P PN    + T NR   H ++ N +F
Sbjct: 717 VERKYHFQNMTPKPNGTNSVTTLNRTQTHSSEVNDLF 753


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 129 LTSNRKLNHHTQKNIIF*SDYSTLVPNSCSTGGST*FIEQAA 4
           LT +  L +    N IF +    +  N C+  G T F+EQAA
Sbjct: 163 LTGDVALQYIPTMNCIFCAQKKNIPINVCNIEGGTLFLEQAA 204


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 314  RIRVLQLTLYCVMTLTRRYIPIQIFVVFFILTFE 213
            R R LQL +  + TL     P  I+  +F  TFE
Sbjct: 3431 RQRALQLRMQLLETLNSSVFPESIYYDYFYKTFE 3464


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 21  TMWIPR-CCMNSARVWNNHFKILCSFECDDSVFCYLLKAFNLN 146
           +M IP+ C + S  V N   +++C   CD +     +  +N+N
Sbjct: 253 SMPIPKFCTVESLNVPNRKLRVVCDVSCDTTNPNNPIPIYNVN 295


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 234 FFYTYIRNIVR*HIPIQIHYYYSDKIP 154
           FF+ +  +  R HI I IH Y S+ +P
Sbjct: 80  FFFFFFSHCRRFHIAIFIHPYDSNVVP 106


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 80  FKVIIPHSCRIHAAPGDPHSS 18
           F+V +P +C++ AA G P  S
Sbjct: 572 FEVELPKACKVPAAQGSPAKS 592


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 5   AACSMNYVDPPVLH 46
           A  +M+Y+DPP++H
Sbjct: 172 AVAAMHYLDPPLIH 185


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 245 FVSECIAALMSLHSKVSTAELVSGYSRRSHCYLRVT 352
           F+SE +    +  +KV  AEL+S   R+  CYL++T
Sbjct: 444 FLSESLETSNNNLTKVQ-AELLSTKMRQEACYLQLT 478


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 273 INAAIHSDTNFCSFFYTYIRNIVR*HIPIQ 184
           +N A H DT+F     T  R +V  ++  Q
Sbjct: 378 VNTAFHGDTDFTKSLDTAFRELVNRNVVCQ 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,565,317
Number of Sequences: 5004
Number of extensions: 27851
Number of successful extensions: 49
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)