Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G21
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0451 - 20925100-20926734                                         27   7.2  
05_01_0228 + 1692117-1692924,1693321-1693431,1693536-1693675,169...    26   9.5  

>06_03_0451 - 20925100-20926734
          Length = 544

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 377 VTSLPSTRALHVNSNESVGC-NRIRVLQLT-LYCVMTLTRRYIPIQIFVVFFILT 219
           V +LP+ ++LH+NSN   G      + +L  L C+      + P  + V F  LT
Sbjct: 168 VAALPALKSLHLNSNRFTGVYPAAEIGKLAGLECLTLADNAFAPAPVPVAFAKLT 222


>05_01_0228 +
           1692117-1692924,1693321-1693431,1693536-1693675,
           1693865-1694075,1694148-1694415,1694543-1694696,
           1694795-1695123,1695748-1695835
          Length = 702

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 306 SSAVDTLLCNDINAAIHSDTNFCSFFYTYIRNIVR*HIPIQIHYYYS 166
           + A DT +C+  NA + S  +F +     +RN+       + +YYYS
Sbjct: 142 TDASDTAVCS--NATVSSPASFAATSAALLRNVTAAAPGARDYYYYS 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,828,960
Number of Sequences: 37544
Number of extensions: 158371
Number of successful extensions: 308
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)