Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G19
         (95 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    23   5.4  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    23   5.4  

>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 93  QKQLHIEISECYIQFNAYLYTLGSALTQPSC 1
           QK   +    CY+  +A L TLG  L  P+C
Sbjct: 233 QKPAALVFGSCYVANDATLSTLGRKL--PNC 261


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 33  CIDTH*TEYSIRLSQ 77
           C+D H TEY ++L Q
Sbjct: 122 CMDEHDTEYFLKLKQ 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 318,916
Number of Sequences: 5004
Number of extensions: 2214
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 2,362,478
effective HSP length: 13
effective length of database: 2,297,426
effective search space used: 41353668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)