Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G19
         (95 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34182| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.8  
SB_11194| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  

>SB_34182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 93  QKQLHIEISECYIQFNAYLYTLGS 22
           QK L  EI  CY+  NAY  T+G+
Sbjct: 71  QKDLMSEIRHCYLVSNAYPSTIGA 94



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 93  QKQLHIEISECYIQFNAYLYTLGS 22
           QK L  EI  CY+  NAY  T+G+
Sbjct: 116 QKDLMSEIRHCYLVSNAYPSTIGA 139



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 93  QKQLHIEISECYIQFNAYLYTLGS 22
           QK L  EI  CY+  NAY  T+G+
Sbjct: 161 QKDLMSEIRHCYLVSNAYPSTIGA 184



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 93  QKQLHIEISECYIQFNAYLYTLGS 22
           QK L  EI  CY+  NAY  T+G+
Sbjct: 206 QKDLMSEIRHCYLVSNAYPSTIGA 229



 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 93 QKQLHIEISECYIQFNAYLYTLGS 22
          +K L  EI  CY+  NAY  T+G+
Sbjct: 26 KKDLISEIRHCYLVSNAYPSTVGA 49


>SB_11194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 93  QKQLHIEISECYIQFNAYLYTLGSALTQPSC 1
           QK+  +  + CY+  +  LYTLG  L  P C
Sbjct: 282 QKEAALLFTSCYVANDTTLYTLGKHL--PGC 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,978
Number of Sequences: 59808
Number of extensions: 16103
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 16,821,457
effective HSP length: 12
effective length of database: 16,103,761
effective search space used: 305971459
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)