Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G17
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    27   1.3  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    27   1.3  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   5.2  

>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 360 INLRNYTPHTLIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTLRRIF 214
           INLR      LI  +  +V D+E+H  E+I+ +  G+  +  S  R  F
Sbjct: 271 INLRRSPDDILITDFFGNVRDIELH-SEKINWMLPGENTTKPSIKRNSF 318


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 192 YTRIVYLGIFSVTCFALSAAGRDINSKFAQNNESQ 296
           Y R++ +GIFS   F  S + + INSK A+   +Q
Sbjct: 253 YKRLLSMGIFSEPDFHPSLSRQWINSKIAETKLTQ 287


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 303 MDLEIHYFEQISNLCHGQQHSM 238
           ++L IH  E   + CHGQ +++
Sbjct: 405 LELRIHLAEVFFHCCHGQSYNL 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,545,356
Number of Sequences: 5004
Number of extensions: 29153
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)