Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G17
         (377 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0212 - 1605544-1605647,1605799-1605842,1606189-1606230,160...    30   0.69 
01_06_1807 - 40021733-40021987                                         27   4.9  
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353...    27   6.5  

>12_01_0212 -
           1605544-1605647,1605799-1605842,1606189-1606230,
           1606306-1606394,1606477-1606521,1606801-1606845,
           1606874-1606981,1607065-1607150,1607553-1607640,
           1608185-1608385,1608790-1608865,1608951-1609000,
           1609082-1609144,1609225-1609278,1609395-1609497,
           1610010-1610050,1610654-1610685,1612086-1612224
          Length = 469

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 46  QEIIQITSYSE*LHCC-ECPKWI*YNTLYLGNFVYWL 153
           Q +I++  Y    HC   C  W+ +NTL+  +F YW+
Sbjct: 53  QIVIKLYQYH---HCSPSCTSWVIFNTLFGLSFTYWM 86


>01_06_1807 - 40021733-40021987
          Length = 84

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 351 RNYTPHTLIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTL 226
           R  +P T +RRY S++ DL  H FE+   L    +  +Q+ +
Sbjct: 39  RTVSPDT-VRRYESAISDLAGHGFEEEGYLVINYKSDLQTVM 79


>10_01_0323 +
           3530246-3530446,3531091-3531726,3531860-3532018,
           3532276-3532569,3557747-3557941,3558875-3559095,
           3559190-3559373,3559797-3559973,3561319-3561824,
           3561880-3562060
          Length = 917

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +3

Query: 174 KLKVLLYTRIVYLGIFSVTCFALSAAGRDINSKFAQNNESQG 299
           ++ V + T I+YL +  +   +  A G D+ + F+  N+++G
Sbjct: 556 RMSVFITTLIIYLCVKLMEIDSYVAYGNDVVNSFSTGNQTEG 597


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,954,776
Number of Sequences: 37544
Number of extensions: 152544
Number of successful extensions: 286
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)