Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G17
         (377 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75527-8|CAA99778.2|  316|Caenorhabditis elegans Hypothetical pr...    28   2.5  
AF025456-1|AAB70959.3|  438|Caenorhabditis elegans Hypothetical ...    27   3.4  
AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical ...    26   7.8  

>Z75527-8|CAA99778.2|  316|Caenorhabditis elegans Hypothetical
           protein C15C8.6 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 348 NYTPHTLIRRYMSSVMDLEIHYFEQIS 268
           N   HT IRR+  S ++ ++ YFE IS
Sbjct: 152 NICAHTTIRRFNPSELNWKLQYFEVIS 178


>AF025456-1|AAB70959.3|  438|Caenorhabditis elegans Hypothetical
           protein C46F9.4 protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 291 IHYFEQISNLCHGQQHSMQSTLRRIFPDKLCVYK 190
           +H F  IS L +G+++      R   P +LC++K
Sbjct: 9   VHTFNDISKLGNGKRYYSDIEKRHNIPWRLCIFK 42


>AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical
           protein Y62F5A.10 protein.
          Length = 437

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = +2

Query: 2   YDYIDPCTRKSFLYR-------RRSSK*QVTVSNYTAASVPNGFNTIHYI*VILYTGF 154
           YD+  P T  SFLY        R+  K     S YT   +PNGF+    + V ++TG+
Sbjct: 252 YDFF-PKTTGSFLYYGEMFVNVRKVEKMDEERSRYTIEVLPNGFSNSVMMNVYVHTGW 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,272,092
Number of Sequences: 27780
Number of extensions: 153636
Number of successful extensions: 303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)